RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 GK5Q6ZS86 529 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 TSPYL5Q86VY4 417 aaPredicted RBP9.48□□□□□ -0.89
CCDC39-202ENST00000471307 TMEM40Q8WWA1 233 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 EAF1Q96JC9 268 aaPredicted RBP9.48□□□□□ -0.89
CCDC39-202ENST00000471307 GOLGA2P5Q9HBQ8 144 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 CARMIL2Q6F5E8 1435 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.47□□□□□ -0.89
CCDC39-202ENST00000471307 UBOX5O94941 541 aa9.47□□□□□ -0.89
CCDC39-202ENST00000471307 CLCQ05315 142 aa9.47□□□□□ -0.89
CCDC39-202ENST00000471307 NLRC3Q7RTR2 1065 aa9.47□□□□□ -0.89
CCDC39-202ENST00000471307 ATG4CQ96DT6 458 aa9.47□□□□□ -0.89
CCDC39-202ENST00000471307 IMPDH2P12268 514 aa9.46□□□□□ -0.9
CCDC39-202ENST00000471307 ZSWIM9Q86XI8 627 aa9.46□□□□□ -0.9
CCDC39-202ENST00000471307 POU5F2Q8N7G0 328 aa9.46□□□□□ -0.9
CCDC39-202ENST00000471307 ENOX1Q8TC92 643 aaKnown RBP9.46□□□□□ -0.9
CCDC39-202ENST00000471307 KRTAP4-12Q9BQ66 201 aa9.46□□□□□ -0.9
CCDC39-202ENST00000471307 DUSP13Q9UII6 198 aa9.46□□□□□ -0.9
CCDC39-202ENST00000471307 DDX41Q9UJV9 622 aaKnown RBP9.46□□□□□ -0.9
CCDC39-202ENST00000471307 ZNF394Q53GI3 561 aa9.45□□□□□ -0.9
CCDC39-202ENST00000471307 OGFOD2Q6N063 350 aa9.45□□□□□ -0.9
CCDC39-202ENST00000471307 CREG2Q8IUH2 290 aa9.45□□□□□ -0.9
CCDC39-202ENST00000471307 C19orf73Q9NVV2 129 aa9.45□□□□□ -0.9
CCDC39-202ENST00000471307 ZNRF3Q9ULT6 936 aa9.45□□□□□ -0.9
CCDC39-202ENST00000471307 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.45□□□□□ -0.9
CCDC39-202ENST00000471307 KRTAP9-6A0A140TA67 174 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 TNFRSF10CO14798 259 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 LRRN2O75325 713 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 KCNMB1Q16558 191 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 ASCC2Q9H1I8 757 aaPredicted RBP9.44□□□□□ -0.9
CCDC39-202ENST00000471307 FAM53CQ9NYF3 392 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 SLAMF8Q9P0V8 285 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 TMEM59LQ9UK28 342 aa9.44□□□□□ -0.9
CCDC39-202ENST00000471307 NME1P15531 152 aaKnown RBP9.43□□□□□ -0.9
CCDC39-202ENST00000471307 SPATA32Q96LK8 384 aa9.43□□□□□ -0.9
CCDC39-202ENST00000471307 PCDHGB7Q9Y5F8 929 aa9.43□□□□□ -0.9
CCDC39-202ENST00000471307 RAC2P15153 192 aa9.42□□□□□ -0.9
CCDC39-202ENST00000471307 RACK1P63244 317 aaKnown RBP9.42□□□□□ -0.9
CCDC39-202ENST00000471307 CLEC16AQ2KHT3 1053 aa9.42□□□□□ -0.9
CCDC39-202ENST00000471307 NBPF12Q5TAG4 269 aaPredicted RBP9.42□□□□□ -0.9
CCDC39-202ENST00000471307 INTS3Q68E01 1043 aaKnown RBP9.42□□□□□ -0.9
CCDC39-202ENST00000471307 ZNF654Q8IZM8 581 aa9.42□□□□□ -0.9
CCDC39-202ENST00000471307 MRRFQ96E11 262 aaKnown RBP9.42□□□□□ -0.9
CCDC39-202ENST00000471307 KIRREL1Q96J84 757 aa9.42□□□□□ -0.9
CCDC39-202ENST00000471307 WASH4PA8MWX3 477 aa9.41□□□□□ -0.9
CCDC39-202ENST00000471307 CLEC3AO75596 197 aa9.41□□□□□ -0.9
CCDC39-202ENST00000471307 LTKP29376 864 aa9.41□□□□□ -0.9
CCDC39-202ENST00000471307 EGR3Q06889 387 aa9.41□□□□□ -0.9
CCDC39-202ENST00000471307 COL9A2Q14055 689 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-202ENST00000471307 SYTL5Q8TDW5 730 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-202ENST00000471307 SYTL4Q96C24 671 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-202ENST00000471307 GLI1P08151 1106 aa9.4□□□□□ -0.9
CCDC39-202ENST00000471307 NMIQ13287 307 aaPredicted RBP9.4□□□□□ -0.9
CCDC39-202ENST00000471307 NBPF9Q3BBW0 867 aa9.4□□□□□ -0.9
CCDC39-202ENST00000471307 TTC6Q86TZ1 520 aa9.4□□□□□ -0.9
CCDC39-202ENST00000471307 METTL16Q86W50 562 aaKnown RBP9.4□□□□□ -0.9
CCDC39-202ENST00000471307 TAB3Q8N5C8 712 aaPredicted RBP9.4□□□□□ -0.9
CCDC39-202ENST00000471307 RGS22Q8NE09 1264 aa9.4□□□□□ -0.9
CCDC39-202ENST00000471307 DHX38Q92620 1227 aaKnown RBP9.4□□□□□ -0.9
CCDC39-202ENST00000471307 PCDHA11Q9Y5I1 949 aa9.4□□□□□ -0.9
CCDC39-202ENST00000471307 DNAJC25-GNG10A0A024R161 153 aa9.39□□□□□ -0.91
CCDC39-202ENST00000471307 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
CCDC39-202ENST00000471307 RBAK-RBAKDNI3L0D1 243 aa9.39□□□□□ -0.91
CCDC39-202ENST00000471307 YBX3P16989 372 aaKnown RBP eCLIP9.39□□□□□ -0.91
CCDC39-202ENST00000471307 POLR2BP30876 1174 aaKnown RBP9.39□□□□□ -0.91
CCDC39-202ENST00000471307 RALGPS1Q5JS13 557 aa9.39□□□□□ -0.91
CCDC39-202ENST00000471307 RBBP8NLQ8NC74 664 aaPredicted RBP9.39□□□□□ -0.91
CCDC39-202ENST00000471307 TMEM67Q5HYA8 995 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 KRTAP19-1Q8IUB9 90 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 ZNF655Q8N720 491 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-202ENST00000471307 DAGLBQ8NCG7 672 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 PDZD8Q8NEN9 1154 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 FERD3LQ96RJ6 166 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 TM9SF2Q99805 663 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 HDAC8Q9BY41 377 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 ANTXR1Q9H6X2 564 aa9.38□□□□□ -0.91
CCDC39-202ENST00000471307 ZNF503-AS2A6NEH8 195 aa9.37□□□□□ -0.91
CCDC39-202ENST00000471307 FARP2O94887 1054 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-202ENST00000471307 HPXP02790 462 aa9.37□□□□□ -0.91
CCDC39-202ENST00000471307 FYB2Q5VWT5 728 aa9.37□□□□□ -0.91
CCDC39-202ENST00000471307 DHRS1Q96LJ7 313 aa9.37□□□□□ -0.91
CCDC39-202ENST00000471307 ZGLP1P0C6A0 271 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 DUSP4Q13115 394 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 RNF111Q6ZNA4 994 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 TMEM192Q8IY95 271 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 OXR1Q8N573 874 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 SLC6A18Q96N87 628 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 SLC9A7Q96T83 725 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 ADAMTS10Q9H324 1103 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 PRR13Q9NZ81 148 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 KIAA1522Q9P206 1035 aaPredicted RBP9.36□□□□□ -0.91
CCDC39-202ENST00000471307 ZNF281Q9Y2X9 895 aa9.36□□□□□ -0.91
CCDC39-202ENST00000471307 LRRC10BA6NIK2 292 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 HK2P52789 917 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 TEKQ02763 1124 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 NR0B2Q15466 257 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 LILRA2Q8N149 483 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 ABHD4Q8TB40 342 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 RASGRP4Q8TDF6 673 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 MYLIPQ8WY64 445 aa9.35□□□□□ -0.91
CCDC39-202ENST00000471307 CCDC9Q9Y3X0 531 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms