RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ICA1Q05084 483 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 TRMT44Q8IYL2 757 aaKnown RBP19.59■□□□□ 0.73
COL9A3-208ENST00000469802 PI4K2BQ8TCG2 481 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 LPAR1Q92633 364 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 APBA2Q99767 749 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 TMX2Q9Y320 296 aa19.59■□□□□ 0.73
COL9A3-208ENST00000469802 SALL3Q9BXA9 1300 aa19.58■□□□□ 0.73
COL9A3-208ENST00000469802 GSG1L2A8MUP6 293 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 H0YGN5 161 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 RNF113AO15541 343 aaKnown RBP19.58■□□□□ 0.72
COL9A3-208ENST00000469802 ZFYP08048 801 aaPredicted RBP19.58■□□□□ 0.72
COL9A3-208ENST00000469802 SBK1Q52WX2 424 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 HABP4Q5JVS0 413 aaKnown RBP19.58■□□□□ 0.72
COL9A3-208ENST00000469802 GIMAP6Q6P9H5 292 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 OTUD7AQ8TE49 926 aaPredicted RBP19.58■□□□□ 0.72
COL9A3-208ENST00000469802 HTATIP2Q9BUP3 242 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 ARHGEF10LQ9HCE6 1279 aa19.58■□□□□ 0.72
COL9A3-208ENST00000469802 ZNFX1Q9P2E3 1918 aaKnown RBP19.58■□□□□ 0.72
COL9A3-208ENST00000469802 ZKSCAN1P17029 563 aaPredicted RBP19.57■□□□□ 0.72
COL9A3-208ENST00000469802 CCAR1Q8IX12 1150 aaKnown RBP19.57■□□□□ 0.72
COL9A3-208ENST00000469802 SH2D4AQ9H788 454 aa19.57■□□□□ 0.72
COL9A3-208ENST00000469802 VCPKMTQ9H867 229 aa19.57■□□□□ 0.72
COL9A3-208ENST00000469802 EPB41L4AQ9HCS5 686 aaPredicted RBP19.57■□□□□ 0.72
COL9A3-208ENST00000469802 HMX1Q9NP08 348 aaPredicted RBP19.57■□□□□ 0.72
COL9A3-208ENST00000469802 TFRCP02786 760 aaKnown RBP19.56■□□□□ 0.72
COL9A3-208ENST00000469802 PRKAR2AP13861 404 aaKnown RBP19.56■□□□□ 0.72
COL9A3-208ENST00000469802 MAP2K5Q13163 448 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 GRB14Q14449 540 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 COG2Q14746 738 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 CCL14Q16627 93 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 ANKLE1Q8NAG6 615 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 TANGO6Q9C0B7 1094 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 PLXNA1Q9UIW2 1896 aa19.56■□□□□ 0.72
COL9A3-208ENST00000469802 SLC15A5A6NIM6 579 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 M0R2C6 588 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 ERC2O15083 957 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 GPAA1O43292 621 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 GLRX3O76003 335 aaKnown RBP19.55■□□□□ 0.72
COL9A3-208ENST00000469802 HOXC6P09630 235 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 PTPREP23469 700 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 MNX1P50219 401 aaPredicted RBP19.55■□□□□ 0.72
COL9A3-208ENST00000469802 CRBNQ96SW2 442 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.55■□□□□ 0.72
COL9A3-208ENST00000469802 KANSL2Q9H9L4 492 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 HOXC10Q9NYD6 342 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 TRIOBPQ9H2D6 2365 aa19.55■□□□□ 0.72
COL9A3-208ENST00000469802 WDR46O15213 610 aaKnown RBP19.54■□□□□ 0.72
COL9A3-208ENST00000469802 EEF2P13639 858 aaKnown RBP19.54■□□□□ 0.72
COL9A3-208ENST00000469802 MX1P20591 662 aa19.54■□□□□ 0.72
COL9A3-208ENST00000469802 CACNB2Q08289 660 aaPredicted RBP19.54■□□□□ 0.72
COL9A3-208ENST00000469802 MB21D1Q8N884 522 aa19.54■□□□□ 0.72
COL9A3-208ENST00000469802 DIS3LQ8TF46 1054 aaKnown RBP19.54■□□□□ 0.72
COL9A3-208ENST00000469802 DPF3Q92784 378 aa19.54■□□□□ 0.72
COL9A3-208ENST00000469802 OGDHLQ9ULD0 1010 aa19.54■□□□□ 0.72
COL9A3-208ENST00000469802 IGHA2P01877 340 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 GNAT2P19087 354 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 RASA1P20936 1047 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 DSG3P32926 999 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 SPICE1Q8N0Z3 855 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 SHCBP1Q8NEM2 672 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 PAWRQ96IZ0 340 aaKnown RBP19.53■□□□□ 0.72
COL9A3-208ENST00000469802 MOV10L1Q9BXT6 1211 aaKnown RBP19.53■□□□□ 0.72
COL9A3-208ENST00000469802 SPATC1LQ9H0A9 340 aa19.53■□□□□ 0.72
COL9A3-208ENST00000469802 CWC22Q9HCG8 908 aaKnown RBP19.53■□□□□ 0.72
COL9A3-208ENST00000469802 COLQQ9Y215 455 aaPredicted RBP19.53■□□□□ 0.72
COL9A3-208ENST00000469802 FLOT1O75955 427 aa19.52■□□□□ 0.72
COL9A3-208ENST00000469802 HDAC1Q13547 482 aaPredicted RBP19.52■□□□□ 0.72
COL9A3-208ENST00000469802 LRRFIP1Q32MZ4 808 aaKnown RBP19.52■□□□□ 0.72
COL9A3-208ENST00000469802 FLRT1Q9NZU1 646 aa19.52■□□□□ 0.72
COL9A3-208ENST00000469802 IVNS1ABPQ9Y6Y0 642 aa19.52■□□□□ 0.72
COL9A3-208ENST00000469802 RANBP2P49792 3224 aaKnown RBP19.52■□□□□ 0.72
COL9A3-208ENST00000469802 CCND3P30281 292 aaPredicted RBP19.51■□□□□ 0.71
COL9A3-208ENST00000469802 ZMYM1Q5SVZ6 1142 aa19.51■□□□□ 0.71
COL9A3-208ENST00000469802 WDR78Q5VTH9 848 aa19.51■□□□□ 0.71
COL9A3-208ENST00000469802 NECAB2Q7Z6G3 386 aa19.51■□□□□ 0.71
COL9A3-208ENST00000469802 ATG4CQ96DT6 458 aa19.51■□□□□ 0.71
COL9A3-208ENST00000469802 ADAMTS5Q9UNA0 930 aa19.51■□□□□ 0.71
COL9A3-208ENST00000469802 PLIN4Q96Q06 1357 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 IGKV6D-41A0A0C4DH26 115 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 LHX8Q68G74 356 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 NPLOC4Q8TAT6 608 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 SEC62Q99442 399 aaKnown RBP19.5■□□□□ 0.71
COL9A3-208ENST00000469802 FSD1Q9BTV5 496 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 PRO3102Q9H379 93 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 NR2E3Q9Y5X4 410 aa19.5■□□□□ 0.71
COL9A3-208ENST00000469802 MINDY4BA8MYZ0 360 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 STRNO43815 780 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 ERCC3P19447 782 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 TDO2P48775 406 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 FXR1P51114 621 aaKnown RBP eCLIP19.49■□□□□ 0.71
COL9A3-208ENST00000469802 IFNL3Q8IZI9 196 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 NBPF3Q9H094 633 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 GOPCQ9HD26 462 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 NYAP2Q9P242 653 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 STAP2Q9UGK3 403 aa19.49■□□□□ 0.71
COL9A3-208ENST00000469802 PATL2C9JE40 543 aaKnown RBP19.48■□□□□ 0.71
COL9A3-208ENST00000469802 ADORA2AP29274 412 aa19.48■□□□□ 0.71
COL9A3-208ENST00000469802 ATP2B2Q01814 1243 aa19.48■□□□□ 0.71
COL9A3-208ENST00000469802 TMEM132BQ14DG7 1078 aa19.48■□□□□ 0.71
COL9A3-208ENST00000469802 CHRDL2Q6WN34 429 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms