RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLC17A8Q8NDX2 589 aa19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 PAWRQ96IZ0 340 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 CUL9Q8IWT3 2517 aa19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 SLC15A5A6NIM6 579 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 SMIM22K7EJ46 135 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 ICA1Q05084 483 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 CACNB2Q08289 660 aaPredicted RBP19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 MAP2K5Q13163 448 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 COG2Q14746 738 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 CCL14Q16627 93 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 NECAB2Q7Z6G3 386 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 SIAH1Q8IUQ4 282 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 KBTBD3Q8NAB2 608 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 DIS3LQ8TF46 1054 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 LPAR1Q92633 364 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 SH2D4AQ9H788 454 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 ARHGEF10LQ9HCE6 1279 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 HOXC10Q9NYD6 342 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 RLFQ13129 1914 aa19.92■□□□□ 0.78
CCDC28B-204ENST00000469003 A0A0G2JMZ2 1700 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 A0A0C4DFX4 3053 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 PTPREP23469 700 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 WDR78Q5VTH9 848 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 CTR9Q6PD62 1173 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 TANGO6Q9C0B7 1094 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 OGDHLQ9ULD0 1010 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 TMX2Q9Y320 296 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 ALPK3Q96L96 1907 aa19.91■□□□□ 0.78
CCDC28B-204ENST00000469003 EVI5O60447 810 aa19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 KIAA1755Q5JYT7 1200 aa19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 CLEC10AQ8IUN9 316 aa19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 STRBPQ96SI9 672 aaKnown RBP19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 VCPKMTQ9H867 229 aa19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 ARPP21Q9UBL0 812 aaPredicted RBP19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 IVNS1ABPQ9Y6Y0 642 aa19.9■□□□□ 0.78
CCDC28B-204ENST00000469003 MNX1P50219 401 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 GRB14Q14449 540 aa19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 TSHZ3Q63HK5 1081 aa19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 APPBP2Q92624 585 aa19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 NBPF3Q9H094 633 aa19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 PCDHB15Q9Y5E8 787 aa19.89■□□□□ 0.77
CCDC28B-204ENST00000469003 RNF113AO15541 343 aaKnown RBP19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 ZFYP08048 801 aaPredicted RBP19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 HOXC6P09630 235 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 SBK1Q52WX2 424 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 GIMAP6Q6P9H5 292 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 MB21D1Q8N884 522 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 OSBP2Q969R2 916 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 MOV10L1Q9BXT6 1211 aaKnown RBP19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 KANSL2Q9H9L4 492 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 PARP14Q460N5 1801 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 ZNF236Q9UL36 1845 aa19.88■□□□□ 0.77
CCDC28B-204ENST00000469003 TTC41PQ6P2S7 1318 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 GSG1L2A8MUP6 293 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 WDR46O15213 610 aaKnown RBP19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 FLOT1O75955 427 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 CCND3P30281 292 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 DSG3P32926 999 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 MFSD14CQ5VZR4 134 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 SPICE1Q8N0Z3 855 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 SHCBP1Q8NEM2 672 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 SPATC1LQ9H0A9 340 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 FLRT1Q9NZU1 646 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 COL6A3P12111 3177 aa19.87■□□□□ 0.77
CCDC28B-204ENST00000469003 GREB1LQ9C091 1923 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 STRNO43815 780 aa19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 EEF2P13639 858 aaKnown RBP19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 NPLOC4Q8TAT6 608 aa19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 PRO3102Q9H379 93 aa19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 C11orf49Q9H6J7 331 aa19.86■□□□□ 0.77
CCDC28B-204ENST00000469003 ROBO3Q96MS0 1386 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 ERC2O15083 957 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 RRP1P56182 461 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 ATP2B2Q01814 1243 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 LRRFIP1Q32MZ4 808 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 LHX8Q68G74 356 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 ATG4CQ96DT6 458 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 FRMPD3Q5JV73 1810 aa19.85■□□□□ 0.77
CCDC28B-204ENST00000469003 GPAA1O43292 621 aa19.84■□□□□ 0.77
CCDC28B-204ENST00000469003 GNAT2P19087 354 aa19.84■□□□□ 0.77
CCDC28B-204ENST00000469003 ERCC3P19447 782 aa19.84■□□□□ 0.77
CCDC28B-204ENST00000469003 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.84■□□□□ 0.77
CCDC28B-204ENST00000469003 GOPCQ9HD26 462 aa19.84■□□□□ 0.77
CCDC28B-204ENST00000469003 MINDY4BA8MYZ0 360 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 M0R2C6 588 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 IGHA2P01877 340 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 RASA1P20936 1047 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 ADORA2AP29274 412 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 DPP9Q86TI2 863 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 PI4K2BQ8TCG2 481 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 MROH8Q9H579 483 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 MKNK2Q9HBH9 465 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 EPB41L4AQ9HCS5 686 aaPredicted RBP19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 ADAMTS5Q9UNA0 930 aa19.83■□□□□ 0.77
CCDC28B-204ENST00000469003 PFASO15067 1338 aa19.82■□□□□ 0.76
CCDC28B-204ENST00000469003 COL11A1P12107 1806 aaPredicted RBP19.82■□□□□ 0.76
CCDC28B-204ENST00000469003 COL6A1P12109 1028 aa19.82■□□□□ 0.76
CCDC28B-204ENST00000469003 PLS1Q14651 629 aa19.82■□□□□ 0.76
CCDC28B-204ENST00000469003 C7orf61Q8IZ16 206 aa19.82■□□□□ 0.76
CCDC28B-204ENST00000469003 OTUD7AQ8TE49 926 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms