RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 GPATCH3Q96I76 525 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 APBA2Q99767 749 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 VCPKMTQ9H867 229 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 FLRT1Q9NZU1 646 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 ARPP21Q9UBL0 812 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-211ENST00000467464 GPAA1O43292 621 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 ZFYP08048 801 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-211ENST00000467464 PRKAR2AP13861 404 aaKnown RBP14.37□□□□□ -0.11
PTPRF-211ENST00000467464 RASA1P20936 1047 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 PTPREP23469 700 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 RGS2P41220 211 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 CACNB2Q08289 660 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-211ENST00000467464 MAP2K5Q13163 448 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 GRB14Q14449 540 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 LPAR1Q92633 364 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 HMX1Q9NP08 348 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-211ENST00000467464 OGDHLQ9ULD0 1010 aa14.37□□□□□ -0.11
PTPRF-211ENST00000467464 SLC15A5A6NIM6 579 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 TFRCP02786 760 aaKnown RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 HOXC6P09630 235 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 EEF2P13639 858 aaKnown RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 ZKSCAN1P17029 563 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 DSG3P32926 999 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 CCNA1P78396 465 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 COG2Q14746 738 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 TRMT44Q8IYL2 757 aaKnown RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 SPICE1Q8N0Z3 855 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 ATG4CQ96DT6 458 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 SEC62Q99442 399 aaKnown RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 HTATIP2Q9BUP3 242 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 MOV10L1Q9BXT6 1211 aaKnown RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 PRO3102Q9H379 93 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 ARHGEF10LQ9HCE6 1279 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 COLQQ9Y215 455 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-211ENST00000467464 RLFQ13129 1914 aa14.36□□□□□ -0.11
PTPRF-211ENST00000467464 GREB1LQ9C091 1923 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-211ENST00000467464 IGKV6D-41A0A0C4DH26 115 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 FOXP2O15409 715 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 GLRX3O76003 335 aaKnown RBP14.35□□□□□ -0.11
PTPRF-211ENST00000467464 MX1P20591 662 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 LHX8Q68G74 356 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 AMOTL1Q8IY63 956 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 ANKLE1Q8NAG6 615 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 NPLOC4Q8TAT6 608 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 DDRGK1Q96HY6 314 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 PAWRQ96IZ0 340 aaKnown RBP14.35□□□□□ -0.11
PTPRF-211ENST00000467464 TANGO6Q9C0B7 1094 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 SPATC1LQ9H0A9 340 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 KANSL2Q9H9L4 492 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 HOXC10Q9NYD6 342 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 ADAMTS5Q9UNA0 930 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 RANBP2P49792 3224 aaKnown RBP14.35□□□□□ -0.11
PTPRF-211ENST00000467464 MYH7P12883 1935 aa14.35□□□□□ -0.11
PTPRF-211ENST00000467464 DOCK3Q8IZD9 2030 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 ERC2O15083 957 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 WDR46O15213 610 aaKnown RBP14.34□□□□□ -0.11
PTPRF-211ENST00000467464 CCND3P30281 292 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-211ENST00000467464 HDAC1Q13547 482 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-211ENST00000467464 ZMYM1Q5SVZ6 1142 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 MB21D1Q8N884 522 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 SHCBP1Q8NEM2 672 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 DPF3Q92784 378 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 SH2D4AQ9H788 454 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 BAZ2AQ9UIF9 1905 aaKnown RBP14.34□□□□□ -0.11
PTPRF-211ENST00000467464 ZNF236Q9UL36 1845 aa14.34□□□□□ -0.11
PTPRF-211ENST00000467464 FLOT1O75955 427 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 GNAT2P19087 354 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 FXR1P51114 621 aaKnown RBP eCLIP14.33□□□□□ -0.12
PTPRF-211ENST00000467464 CCAR1Q8IX12 1150 aaKnown RBP14.33□□□□□ -0.12
PTPRF-211ENST00000467464 REPS2Q8NFH8 660 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 FBXO28Q9NVF7 368 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 STAP2Q9UGK3 403 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 PFASO15067 1338 aa14.33□□□□□ -0.12
PTPRF-211ENST00000467464 MINDY4BA8MYZ0 360 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 COBLO75128 1261 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 COL6A1P12109 1028 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 ERCC3P19447 782 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 TMEM132BQ14DG7 1078 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 WDR78Q5VTH9 848 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 CHRDL2Q6WN34 429 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 IFNL3Q8IZI9 196 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 STK11IPQ8N1F8 1099 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 TRPV1Q8NER1 839 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 FSD1Q9BTV5 496 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 NYAP2Q9P242 653 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 PLIN4Q96Q06 1357 aa14.32□□□□□ -0.12
PTPRF-211ENST00000467464 PATL2C9JE40 543 aaKnown RBP14.31□□□□□ -0.12
PTPRF-211ENST00000467464 PRDM1O75626 825 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 ADORA2AP29274 412 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 TDO2P48775 406 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 FAM83BQ5T0W9 1011 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 ANKRD45Q5TZF3 282 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 NECAB2Q7Z6G3 386 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 CWC22Q9HCG8 908 aaKnown RBP14.31□□□□□ -0.12
PTPRF-211ENST00000467464 PPP1R9AQ9ULJ8 1098 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 IVNS1ABPQ9Y6Y0 642 aa14.31□□□□□ -0.12
PTPRF-211ENST00000467464 VWA5AO00534 786 aa14.3□□□□□ -0.12
PTPRF-211ENST00000467464 STRNO43815 780 aa14.3□□□□□ -0.12
PTPRF-211ENST00000467464 CYBAP13498 195 aa14.3□□□□□ -0.12
PTPRF-211ENST00000467464 CYP2C19P33261 490 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms