RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 RNF41Q9H4P4 317 aaPredicted RBP14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 GOPCQ9HD26 462 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 STX8Q9UNK0 236 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 SLC45A1Q9Y2W3 748 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 TMX2Q9Y320 296 aa14.24□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L15C9J2P7 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L13C9JLJ4 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L11C9JVI0 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L18D6R9N7 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L22D6RA61 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L17D6RBQ6 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L19D6RCP7 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L20D6RJB6 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 ORC4O43929 436 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 TTLL1O95922 423 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 USP17L24Q0WX57 530 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 C17orf99Q6UX52 265 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 STAG1Q8WVM7 1258 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 NUP88Q99567 741 aaPredicted RBP14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 ZKSCAN3Q9BRR0 538 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 VCPKMTQ9H867 229 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 MTMR4Q9NYA4 1195 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 NYAP2Q9P242 653 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 TRIM17Q9Y577 477 aa14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 U3KPZ7 1027 aaPredicted RBP14.23□□□□□ -0.13
SHROOM3-202ENST00000466541 ADGRA2Q96PE1 1338 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 IGKV6D-41A0A0C4DH26 115 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 B4E1Z4 1266 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 FMNL1O95466 1100 aaPredicted RBP14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 HOXA7P31268 230 aaPredicted RBP14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 PSMC4P43686 418 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 HERVK_113P62684 666 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 CAP1Q01518 475 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 NOM1Q5C9Z4 860 aaKnown RBP14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 CATSPERGQ6ZRH7 1159 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 CTU1Q7Z7A3 348 aaKnown RBP14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 NKX2-3Q8TAU0 364 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 C12orf42Q96LP6 360 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 EFCC1Q9HA90 598 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 IL17RBQ9NRM6 502 aa14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 RBM8AQ9Y5S9 174 aaKnown RBP14.22□□□□□ -0.13
SHROOM3-202ENST00000466541 F5H6K3 240 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 KDM4AO75164 1064 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 BCRP11274 1271 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 LACTBP83111 547 aaPredicted RBP14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 KLRC3Q07444 240 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 FAM83BQ5T0W9 1011 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 ESR2Q92731 530 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 MCOLN1Q9GZU1 580 aa14.21□□□□□ -0.13
SHROOM3-202ENST00000466541 MGAMO43451 1857 aa14.21□□□□□ -0.14
SHROOM3-202ENST00000466541 FLOT1O75955 427 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 NDUFB10O96000 172 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 CYP21A2P08686 494 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 FGRP09769 529 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 GCLCP48506 637 aaPredicted RBP14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 SLFN13Q68D06 897 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 OTOP1Q7RTM1 612 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 CCAR1Q8IX12 1150 aaKnown RBP14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 LPAR1Q92633 364 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 MAP4K1Q92918 833 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 LSG1Q9H089 658 aaKnown RBP14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 TAF6LQ9Y6J9 622 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 PLIN4Q96Q06 1357 aa14.2□□□□□ -0.14
SHROOM3-202ENST00000466541 WDR46O15213 610 aaKnown RBP14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 CAPN15O75808 1086 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 PCP11498 1178 aaKnown RBP14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 MCCP23508 829 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 CTGFP29279 349 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 TRDNQ13061 729 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 COG2Q14746 738 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 ARHGEF6Q15052 776 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 GPRC5AQ8NFJ5 357 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 KRT23Q9C075 422 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 CWC22Q9HCG8 908 aaKnown RBP14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 TXNRD2Q9NNW7 524 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 FBXO28Q9NVF7 368 aa14.19□□□□□ -0.14
SHROOM3-202ENST00000466541 FCGRTP55899 365 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 IKQ13123 557 aaPredicted RBP14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 PLS1Q14651 629 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 PPP4R3BQ5MIZ7 849 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 WDR78Q5VTH9 848 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 IQCA1Q86XH1 822 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 MKL1Q969V6 931 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 TRIM47Q96LD4 638 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 CNNM2Q9H8M5 875 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 HOXC10Q9NYD6 342 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 ZSWIM5Q9P217 1185 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 RBPJLQ9UBG7 517 aa14.18□□□□□ -0.14
SHROOM3-202ENST00000466541 DOCK3Q8IZD9 2030 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 SPDYE16A6NNV3 312 aaPredicted RBP14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 E7EWF7 191 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 TNPO2O14787 897 aaKnown RBP14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 SLC4A3P48751 1232 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 ERVK-9P63128 1117 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 ERVK-24P63145 666 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 FAM110CQ1W6H9 321 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 CCDC96Q2M329 555 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 Q3C1V9 767 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 POTEEQ6S8J3 1075 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 RASGRP2Q7LDG7 609 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms