RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 USP17L13C9JLJ4 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L11C9JVI0 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L18D6R9N7 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L22D6RA61 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L17D6RBQ6 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L19D6RCP7 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L20D6RJB6 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 K7ELQ4 463 aaPredicted RBP9.1□□□□□ -0.95
USP4-207ENST00000462673 AKR1B1P15121 316 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 RASA1P20936 1047 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 MSNP26038 577 aaKnown RBP9.1□□□□□ -0.95
USP4-207ENST00000462673 NASPP49321 788 aaPredicted RBP9.1□□□□□ -0.95
USP4-207ENST00000462673 HAND2P61296 217 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 USP17L24Q0WX57 530 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 KIF22Q14807 665 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 RCSD1Q6JBY9 416 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 GADL1Q6ZQY3 521 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 ZSCAN30Q86W11 494 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 DGKHQ86XP1 1220 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 PARK7Q99497 189 aaKnown RBP9.1□□□□□ -0.95
USP4-207ENST00000462673 MTMR4Q9NYA4 1195 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 CLIP2Q9UDT6 1046 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 STX8Q9UNK0 236 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 AGTPBP1Q9UPW5 1226 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 TMX2Q9Y320 296 aa9.1□□□□□ -0.95
USP4-207ENST00000462673 RBM8AQ9Y5S9 174 aaKnown RBP9.1□□□□□ -0.95
USP4-207ENST00000462673 PDHXO00330 501 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 PRDM1O75626 825 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 TRPA1O75762 1119 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 FDX1P10109 184 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 EEF2P13639 858 aaKnown RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 HOXA7P31268 230 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 MCM5P33992 734 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 GCLCP48506 637 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 CTCFP49711 727 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 HMGCS2P54868 508 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 IRX3P78415 501 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 PTH1RQ03431 593 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 MTMR2Q13614 643 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 COG2Q14746 738 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 NECTIN1Q15223 517 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 TAF1CQ15572 869 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 TSGA10IPQ3SY00 556 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 HS1BP3Q53T59 392 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 NOM1Q5C9Z4 860 aaKnown RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 FAM47AQ5JRC9 791 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 SYNE3Q6ZMZ3 975 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 CCAR1Q8IX12 1150 aaKnown RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 SLC44A5Q8NCS7 719 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 SMCR8Q8TEV9 937 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 C12orf42Q96LP6 360 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 LSG1Q9H089 658 aaKnown RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 PDCL3Q9H2J4 239 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 RNF186Q9NXI6 227 aa9.09□□□□□ -0.95
USP4-207ENST00000462673 CTDP1Q9Y5B0 961 aaPredicted RBP9.09□□□□□ -0.95
USP4-207ENST00000462673 MYH15Q9Y2K3 1946 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 BTBD19C9JJ37 291 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 E7EWF7 191 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 F5H6K3 240 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 FOXP2O15409 715 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 RAD21O60216 631 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 KDM4AO75164 1064 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CYP21A2P08686 494 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 TOP1P11387 765 aaKnown RBP9.08□□□□□ -0.96
USP4-207ENST00000462673 FGD1P98174 961 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 KLRC3Q07444 240 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 RRP1BQ14684 758 aaKnown RBP9.08□□□□□ -0.96
USP4-207ENST00000462673 KLHL40Q2TBA0 621 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CREB3L3Q68CJ9 461 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CLEC17AQ6ZS10 378 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CHURC1Q8WUH1 139 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CEP95Q96GE4 821 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 TMEM87BQ96K49 555 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 ZSCAN10Q96SZ4 725 aaPredicted RBP9.08□□□□□ -0.96
USP4-207ENST00000462673 VCPKMTQ9H867 229 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 KAT14Q9H8E8 782 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 ZSWIM5Q9P217 1185 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 PNMA2Q9UL42 364 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP4-207ENST00000462673 NAV1Q8NEY1 1877 aa9.08□□□□□ -0.96
USP4-207ENST00000462673 CDK5RAP2Q96SN8 1893 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 SLC27A2O14975 620 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 WDR46O15213 610 aaKnown RBP9.07□□□□□ -0.96
USP4-207ENST00000462673 TLR2O60603 784 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 OFD1O75665 1012 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 GNRH1P01148 92 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 HOXD10P28358 340 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 GJA5P36382 358 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 CCNA1P78396 465 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 IFIT1BQ5T764 474 aaKnown RBP9.07□□□□□ -0.96
USP4-207ENST00000462673 MTERF4Q7Z6M4 381 aaKnown RBP9.07□□□□□ -0.96
USP4-207ENST00000462673 MB21D1Q8N884 522 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 GMCL1P1Q8NEA9 526 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 BRI3BPQ8WY22 251 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 NEK1Q96PY6 1258 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 ZMYND15Q9H091 742 aa9.07□□□□□ -0.96
USP4-207ENST00000462673 BAZ2AQ9UIF9 1905 aaKnown RBP9.06□□□□□ -0.96
USP4-207ENST00000462673 B4E1Z4 1266 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 IFIT3O14879 490 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms