RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TOM1O60784 492 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 GADD45BO75293 160 aaPredicted RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 PARNO95453 639 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 XRCC5P13010 732 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 GNA15P30679 374 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 RAC1P63000 192 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 RACK1P63244 317 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 PIP4K2BP78356 416 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 GRM2Q14416 872 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 BMS1Q14692 1282 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 GORABQ5T7V8 394 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 HGSNATQ68CP4 663 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 VN1R5Q7Z5H4 357 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 FBXO11Q86XK2 927 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 GALNT11Q8NCW6 608 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 PNISRQ8TF01 805 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 UBE2Q2Q8WVN8 375 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 BSNDQ8WZ55 320 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 MRFAP1L1Q96HT8 127 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 CARD10Q9BWT7 1032 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 EHD4Q9H223 541 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 MRPL42Q9Y6G3 142 aaKnown RBP6.04□□□□□ -1.44
CSMD3-205ENST00000462254 SHANK3Q9BYB0 1731 aa6.04□□□□□ -1.44
CSMD3-205ENST00000462254 MAP3K19Q56UN5 1328 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 BLMP54132 1417 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-205ENST00000462254 ENPP3O14638 875 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 ELNP15502 786 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 SELPP16109 830 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 CHRNA4P43681 627 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 PTPN12Q05209 780 aaKnown RBP6.03□□□□□ -1.44
CSMD3-205ENST00000462254 PLA2G4EQ3MJ16 856 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 NBPF6Q5VWK0 638 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 ALYREFQ86V81 257 aaKnown RBP6.03□□□□□ -1.44
CSMD3-205ENST00000462254 CD163Q86VB7 1156 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 FAM9BQ8IZU0 186 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 DTWD1Q8N5C7 304 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 GLIS3Q8NEA6 775 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 NBPF4Q96M43 638 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 FRMD6Q96NE9 622 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 MAGEC2Q9UBF1 373 aaPredicted RBP6.03□□□□□ -1.44
CSMD3-205ENST00000462254 COL4A3BPQ9Y5P4 624 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 RTL1A6NKG5 1358 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 FLT4P35916 1363 aa6.03□□□□□ -1.44
CSMD3-205ENST00000462254 PKD1L3Q7Z443 1732 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.02□□□□□ -1.45
CSMD3-205ENST00000462254 PARP4Q9UKK3 1724 aaKnown RBP6.02□□□□□ -1.45
CSMD3-205ENST00000462254 A0A096LPE4 126 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 A0A1W2PPZ6 126 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 C1QTNF9BB2RNN3 333 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 DLL1O00548 723 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 FSCN2O14926 492 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 GCP02774 474 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 GJA8P48165 433 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 ZNF394Q53GI3 561 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 HSP90AB2PQ58FF8 381 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 USP48Q86UV5 1035 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 CACTIN-AS1Q8N1I8 211 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 FBF1Q8TES7 1133 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.02□□□□□ -1.45
CSMD3-205ENST00000462254 SRA1Q9HD15 236 aaKnown RBP6.02□□□□□ -1.45
CSMD3-205ENST00000462254 ABCB6Q9NP58 842 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 PCDH12Q9NPG4 1184 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 KCNK4Q9NYG8 393 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 KIF24Q5T7B8 1368 aa6.02□□□□□ -1.45
CSMD3-205ENST00000462254 H3BRJ5 948 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 SOX1O00570 391 aaPredicted RBP6.01□□□□□ -1.45
CSMD3-205ENST00000462254 DDX3YO15523 660 aaKnown RBP6.01□□□□□ -1.45
CSMD3-205ENST00000462254 HOXC9P31274 260 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 NXPE4Q6UWF7 544 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 ARHGEF25Q86VW2 580 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 EXOC8Q8IYI6 725 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 KCNH5Q8NCM2 988 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 ZNF526Q8TF50 670 aaPredicted RBP6.01□□□□□ -1.45
CSMD3-205ENST00000462254 SLC7A3Q8WY07 619 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 MKL1Q969V6 931 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 LRRC59Q96AG4 307 aaKnown RBP6.01□□□□□ -1.45
CSMD3-205ENST00000462254 CFAP53Q96M91 514 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 YTHDC1Q96MU7 727 aaKnown RBP6.01□□□□□ -1.45
CSMD3-205ENST00000462254 BCO2Q9BYV7 579 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 OSBPL7Q9BZF2 842 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 TMX1Q9H3N1 280 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 PCDHGB7Q9Y5F8 929 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 AK5Q9Y6K8 562 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 CPDO75976 1380 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 SCN11AQ9UI33 1791 aa6.01□□□□□ -1.45
CSMD3-205ENST00000462254 TMEM238LA0A1B0GVL6 79 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 FAM177BA6PVY3 158 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 K7ELQ4 463 aaPredicted RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 DIAPH1O60610 1272 aaKnown RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 CTSHP09668 335 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 ATF4P18848 351 aaPredicted RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 IL13P35225 146 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 AMPHP49418 695 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 CABP4P57796 275 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 SERINC3Q13530 473 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 EIF4A2Q14240 407 aaKnown RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 WDR43Q15061 677 aaKnown RBP eCLIP6□□□□□ -1.45
CSMD3-205ENST00000462254 ZNF423Q2M1K9 1284 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 FOXD4L6Q3SYB3 417 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms