RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ADGRA2Q96PE1 1338 aa26.99■■□□□ 1.91
CCDC28B-203ENST00000461819 SPICE1Q8N0Z3 855 aa26.99■■□□□ 1.91
CCDC28B-203ENST00000461819 RPAP3Q9H6T3 665 aaPredicted RBP26.99■■□□□ 1.91
CCDC28B-203ENST00000461819 CNNM2Q9H8M5 875 aa26.99■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L15C9J2P7 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L13C9JLJ4 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L11C9JVI0 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L18D6R9N7 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L22D6RA61 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L17D6RBQ6 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L19D6RCP7 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L20D6RJB6 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 NMT2O60551 498 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 CYP21A2P08686 494 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 SP3Q02447 781 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 USP17L24Q0WX57 530 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 TANGO6Q9C0B7 1094 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 STX8Q9UNK0 236 aa26.98■■□□□ 1.91
CCDC28B-203ENST00000461819 NT5C2P49902 561 aa26.97■■□□□ 1.91
CCDC28B-203ENST00000461819 KIAA1755Q5JYT7 1200 aa26.97■■□□□ 1.91
CCDC28B-203ENST00000461819 LRRC47Q8N1G4 583 aaKnown RBP26.97■■□□□ 1.91
CCDC28B-203ENST00000461819 KRT23Q9C075 422 aa26.97■■□□□ 1.91
CCDC28B-203ENST00000461819 PARP14Q460N5 1801 aa26.97■■□□□ 1.91
CCDC28B-203ENST00000461819 B4E1Z4 1266 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 KDM4AO75164 1064 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 TRDNQ13061 729 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 C17orf99Q6UX52 265 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 ERO1AQ96HE7 468 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 IL17RBQ9NRM6 502 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 MGAMO43451 1857 aa26.96■■□□□ 1.91
CCDC28B-203ENST00000461819 ZSWIM8A7E2V4 1837 aa26.95■■□□□ 1.91
CCDC28B-203ENST00000461819 WDR46O15213 610 aaKnown RBP26.95■■□□□ 1.9
CCDC28B-203ENST00000461819 GCLCP48506 637 aaPredicted RBP26.95■■□□□ 1.9
CCDC28B-203ENST00000461819 CATSPERGQ6ZRH7 1159 aa26.95■■□□□ 1.9
CCDC28B-203ENST00000461819 MKL1Q969V6 931 aa26.95■■□□□ 1.9
CCDC28B-203ENST00000461819 SYNPO2Q9UMS6 1093 aa26.95■■□□□ 1.9
CCDC28B-203ENST00000461819 HERVK_113P62684 666 aa26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 COL13A1Q5TAT6 717 aaPredicted RBP26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 IQCA1Q86XH1 822 aa26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 ANKRD13CQ8N6S4 541 aa26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 CD99L2Q8TCZ2 262 aa26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 P2RX7Q99572 595 aaKnown RBP26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 TCP11L1Q9NUJ3 509 aa26.94■■□□□ 1.9
CCDC28B-203ENST00000461819 F5H6K3 240 aa26.93■■□□□ 1.9
CCDC28B-203ENST00000461819 BCRP11274 1271 aa26.93■■□□□ 1.9
CCDC28B-203ENST00000461819 KLRC3Q07444 240 aa26.93■■□□□ 1.9
CCDC28B-203ENST00000461819 KIF22Q14807 665 aa26.93■■□□□ 1.9
CCDC28B-203ENST00000461819 RALYLQ86SE5 291 aaKnown RBP26.93■■□□□ 1.9
CCDC28B-203ENST00000461819 RLFQ13129 1914 aa26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 NDUFB10O96000 172 aa26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 GMCL1P1Q8NEA9 526 aa26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 NKX2-3Q8TAU0 364 aa26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 GTF3C2Q8WUA4 911 aaPredicted RBP26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 ZKSCAN3Q9BRR0 538 aa26.92■■□□□ 1.9
CCDC28B-203ENST00000461819 E7EWF7 191 aa26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 FLOT1O75955 427 aa26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 FAM83BQ5T0W9 1011 aa26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 ZSWIM5Q9P217 1185 aa26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 ISY1Q9ULR0 285 aaKnown RBP26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 TAF6LQ9Y6J9 622 aa26.91■■□□□ 1.9
CCDC28B-203ENST00000461819 SLC27A2O14975 620 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 ECM2O94769 699 aaPredicted RBP26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 REC8O95072 547 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 LACTBP83111 547 aaPredicted RBP26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 FAM110CQ1W6H9 321 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 CCDC178Q5BJE1 867 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 RNF20Q5VTR2 975 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 CREB3L3Q68CJ9 461 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 SLFN13Q68D06 897 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 SAMD1Q6SPF0 538 aaPredicted RBP26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 CTU1Q7Z7A3 348 aaKnown RBP26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 NCOA7Q8NI08 942 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 NUP88Q99567 741 aaPredicted RBP26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 UBAC1Q9BSL1 405 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 PAGR1Q9BTK6 254 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 A0A0G2JMZ2 1700 aa26.9■■□□□ 1.9
CCDC28B-203ENST00000461819 COL11A1P12107 1806 aaPredicted RBP26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 TOP1P11387 765 aaKnown RBP26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 NOVP48745 357 aa26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 COG2Q14746 738 aa26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 ARHGEF6Q15052 776 aa26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 MTMR7Q9Y216 660 aa26.89■■□□□ 1.9
CCDC28B-203ENST00000461819 SPDYE16A6NNV3 312 aaPredicted RBP26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 NECTIN1Q15223 517 aa26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 STOX1Q6ZVD7 989 aa26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 TTC14Q96N46 770 aa26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 ZSCAN10Q96SZ4 725 aaPredicted RBP26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 TMEM47Q9BQJ4 181 aa26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 HOXC10Q9NYD6 342 aa26.88■■□□□ 1.89
CCDC28B-203ENST00000461819 CHMP4CQ96CF2 233 aa26.87■■□□□ 1.89
CCDC28B-203ENST00000461819 ARHGAP39Q9C0H5 1083 aa26.87■■□□□ 1.89
CCDC28B-203ENST00000461819 EFCC1Q9HA90 598 aa26.87■■□□□ 1.89
CCDC28B-203ENST00000461819 TRIM17Q9Y577 477 aa26.87■■□□□ 1.89
CCDC28B-203ENST00000461819 TNKSO95271 1327 aa26.87■■□□□ 1.89
CCDC28B-203ENST00000461819 RCSD1Q6JBY9 416 aa26.86■■□□□ 1.89
CCDC28B-203ENST00000461819 CYB5R4Q7L1T6 521 aa26.86■■□□□ 1.89
CCDC28B-203ENST00000461819 DGKHQ86XP1 1220 aa26.86■■□□□ 1.89
CCDC28B-203ENST00000461819 GPRC5AQ8NFJ5 357 aa26.86■■□□□ 1.89
CCDC28B-203ENST00000461819 FBXO28Q9NVF7 368 aa26.86■■□□□ 1.89
CCDC28B-203ENST00000461819 MORF4L1Q9UBU8 362 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms