RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 WNT8BQ93098 351 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 OSGEPQ9NPF4 335 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 TMOD3Q9NYL9 352 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 BRPF3Q9ULD4 1205 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 KNSTRNQ9Y448 316 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 C5P01031 1676 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 SOX1O00570 391 aaPredicted RBP9.86□□□□□ -0.83
USP54-208ENST00000461520 YBX3P16989 372 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP54-208ENST00000461520 ARTNQ5T4W7 220 aa9.86□□□□□ -0.83
USP54-208ENST00000461520 ERICH6Q7L0X2 663 aa9.86□□□□□ -0.83
USP54-208ENST00000461520 MORC1Q86VD1 984 aa9.86□□□□□ -0.83
USP54-208ENST00000461520 ITGB4P16144 1822 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 TAF1LQ8IZX4 1826 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 METTL12A8MUP2 240 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 GRIN3BO60391 1043 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 HSP90AB1P08238 724 aaKnown RBP9.85□□□□□ -0.83
USP54-208ENST00000461520 FSTP19883 344 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 ARHGAP4P98171 946 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 AMOTQ4VCS5 1084 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 PLEKHO1Q53GL0 409 aaPredicted RBP9.85□□□□□ -0.83
USP54-208ENST00000461520 ARMC10Q8N2F6 343 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 CEP41Q9BYV8 373 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 ZFP64Q9NPA5 681 aa9.85□□□□□ -0.83
USP54-208ENST00000461520 ERVV-2B6SEH9 535 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 C19orf57Q0VDD7 668 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 IKBKEQ14164 716 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 BHLHE41Q9C0J9 482 aaPredicted RBP9.84□□□□□ -0.83
USP54-208ENST00000461520 ASAP1Q9ULH1 1129 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 RAXQ9Y2V3 346 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 C4BP0C0L5 1744 aa9.84□□□□□ -0.83
USP54-208ENST00000461520 KIF7Q2M1P5 1343 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 ATP10DQ9P241 1426 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 ARL4DP49703 201 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 USPL1Q5W0Q7 1092 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 FAM46AQ96IP4 442 aaKnown RBP9.83□□□□□ -0.84
USP54-208ENST00000461520 ATG3Q9NT62 314 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 CEP350Q5VT06 3117 aa9.83□□□□□ -0.84
USP54-208ENST00000461520 ITPK1Q13572 414 aa9.82□□□□□ -0.84
USP54-208ENST00000461520 LINC00116Q8NCU8 138 aa9.82□□□□□ -0.84
USP54-208ENST00000461520 UTP4Q969X6 686 aaKnown RBP9.82□□□□□ -0.84
USP54-208ENST00000461520 STOML1Q9UBI4 398 aa9.82□□□□□ -0.84
USP54-208ENST00000461520 CD2APQ9Y5K6 639 aa9.82□□□□□ -0.84
USP54-208ENST00000461520 KDRP35968 1356 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 A0A1W2PP55 124 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 DHX15O43143 795 aaKnown RBP9.81□□□□□ -0.84
USP54-208ENST00000461520 HYAL3O43820 417 aaPredicted RBP9.81□□□□□ -0.84
USP54-208ENST00000461520 IL13P35225 146 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 SULT6B1Q6IMI4 303 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 ZNF530Q6P9A1 599 aaPredicted RBP9.81□□□□□ -0.84
USP54-208ENST00000461520 AMIGO3Q86WK7 504 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 AEBP1Q8IUX7 1158 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 GALNT12Q8IXK2 581 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 RUSC1Q9BVN2 902 aa9.81□□□□□ -0.84
USP54-208ENST00000461520 NDUFB5O43674 189 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 MTHFSP49914 203 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 LRP8Q14114 963 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 C1orf141Q5JVX7 400 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 ZNF526Q8TF50 670 aaPredicted RBP9.8□□□□□ -0.84
USP54-208ENST00000461520 WWC3Q9ULE0 1092 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 RNF112Q9ULX5 631 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 UBR3Q6ZT12 1888 aa9.8□□□□□ -0.84
USP54-208ENST00000461520 KDM6AO15550 1401 aaPredicted RBP9.8□□□□□ -0.84
USP54-208ENST00000461520 ESRRAP11474 423 aaPredicted RBP9.79□□□□□ -0.84
USP54-208ENST00000461520 PREPP48147 710 aa9.79□□□□□ -0.84
USP54-208ENST00000461520 ORC1Q13415 861 aa9.79□□□□□ -0.84
USP54-208ENST00000461520 USP26Q9BXU7 913 aa9.79□□□□□ -0.84
USP54-208ENST00000461520 RNF208Q9H0X6 261 aa9.79□□□□□ -0.84
USP54-208ENST00000461520 ZNF831Q5JPB2 1677 aa9.79□□□□□ -0.84
USP54-208ENST00000461520 ADCY9O60503 1353 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 SART1O43290 800 aaKnown RBP9.78□□□□□ -0.84
USP54-208ENST00000461520 SPRED3Q2MJR0 410 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 UVSSAQ2YD98 709 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 SMIM5Q71RC9 77 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 MYRFLQ96LU7 910 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 CNTNAP4Q9C0A0 1308 aa9.78□□□□□ -0.84
USP54-208ENST00000461520 NPC1L1Q9UHC9 1359 aa9.77□□□□□ -0.84
USP54-208ENST00000461520 HMX2A2RU54 273 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 DLGAP3O95886 979 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 GRIA4P48058 902 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 AKAP4Q5JQC9 854 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 ANKRD34AQ69YU3 496 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 CCNJLQ8IV13 435 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 TRIM42Q8IWZ5 723 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 FAM129BQ96TA1 746 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 TCF12Q99081 682 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 C7orf69Q9H7B7 122 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 LIN7BQ9HAP6 207 aa9.77□□□□□ -0.85
USP54-208ENST00000461520 A0A096LPE4 126 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 A0A1W2PPZ6 126 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 DIAPH1O60610 1272 aaKnown RBP9.76□□□□□ -0.85
USP54-208ENST00000461520 RPS6KA4O75676 772 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 IGLV1-40P01703 118 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 BMP3P12645 472 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 HSPA6P17066 643 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 GSTM4Q03013 218 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 CC2D1BQ5T0F9 858 aaKnown RBP9.76□□□□□ -0.85
USP54-208ENST00000461520 FDX2Q6P4F2 183 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 SLC51AQ86UW1 340 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 NLGN1Q8N2Q7 840 aa9.76□□□□□ -0.85
USP54-208ENST00000461520 LOC100289279A0A1B0GTE1 492 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms