RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ZNF804BA4D1E1 1349 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 CCNT1O60563 726 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 PLEKHA8P1O95397 391 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 GUCY1A2P33402 732 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 WDR78Q5VTH9 848 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 PLA2G4DQ86XP0 818 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 TICAM2Q86XR7 235 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 CELF1Q92879 486 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 RBM17Q96I25 401 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 EPSTI1Q96J88 318 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 LUC7LQ9NQ29 371 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 JADE2Q9NQC1 790 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 MATR3P43243 847 aaKnown RBP eCLIP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 ARFGAP3Q9NP61 516 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 LUC7L2Q9Y383 392 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 UBN2Q6ZU65 1347 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 AP5Z1O43299 807 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 INF2Q27J81 1249 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 CNGA4Q8IV77 575 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 OXER1Q8TDS5 423 aa13.12□□□□□ -0.31
NPHP4-204ENST00000460696 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 ARPP21Q9UBL0 812 aaPredicted RBP13.12□□□□□ -0.31
NPHP4-204ENST00000460696 USP17L8P0C7I0 530 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 PLCG2P16885 1265 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 CASP1P29466 404 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 PRDX5P30044 214 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 CDC25BP30305 580 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 KRT9P35527 623 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 PAK1Q13153 545 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 TCERG1LQ5VWI1 586 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 TIGD1Q96MW7 591 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 PLA2G12BQ9BX93 195 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 GGA1Q9UJY5 639 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 TUBB4AP04350 444 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 ETF1P62495 437 aaKnown RBP13.11□□□□□ -0.31
NPHP4-204ENST00000460696 PDE4DQ08499 809 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 IQCB1Q15051 598 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 DIXDC1Q155Q3 683 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 ILDR2Q71H61 639 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 SRRTQ9BXP5 876 aaKnown RBP13.11□□□□□ -0.31
NPHP4-204ENST00000460696 FGFR1OPO95684 399 aaKnown RBP13.11□□□□□ -0.31
NPHP4-204ENST00000460696 NAA30Q147X3 362 aaPredicted RBP13.11□□□□□ -0.31
NPHP4-204ENST00000460696 TBC1D9BQ66K14 1250 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 FAM114A1Q8IWE2 563 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 BLIDQ8IZY5 108 aa13.11□□□□□ -0.31
NPHP4-204ENST00000460696 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.11□□□□□ -0.31
NPHP4-204ENST00000460696 CTAGE9A4FU28 777 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 UBE2Q2LH0YL09 131 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 FOXN1O15353 648 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 USO1O60763 962 aaKnown RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 PDE6BP35913 854 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MFSD14BQ5SR56 506 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 KRT79Q5XKE5 535 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 FUCA2Q9BTY2 467 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 SAMSN1Q9NSI8 373 aaKnown RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 SEPT11Q9NVA2 429 aaKnown RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MAN1B1Q9UKM7 699 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 CPDO75976 1380 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 KNDC1Q76NI1 1749 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 RGPD8O14715 1765 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 RHOXF2BP0C7M4 288 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 CYP2D6P10635 497 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MECOMQ03112 1051 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 SHC4Q6S5L8 630 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 DYNLL2Q96FJ2 89 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 RHOXF2Q9BQY4 288 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 PIK3C2AO00443 1686 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 USP27XA6NNY8 438 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 IKBKBO14920 756 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MYO1BO43795 1136 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 NMT2O60551 498 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 RAD17O75943 681 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MYCNP04198 464 aaPredicted RBP13.1□□□□□ -0.31
NPHP4-204ENST00000460696 TBC1D8BQ0IIM8 1120 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 NFIXQ14938 502 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 SARM1Q6SZW1 724 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 NELFBQ8WX92 580 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 MINPP1Q9UNW1 487 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 HPS5Q9UPZ3 1129 aa13.1□□□□□ -0.31
NPHP4-204ENST00000460696 COL23A1Q86Y22 540 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CSGALNACT2Q8N6G5 542 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 STAG1Q8WVM7 1258 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 TRERF1Q96PN7 1200 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 EYA3Q99504 573 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 ATP8A2Q9NTI2 1148 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 AKAP12Q02952 1782 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CTAGE15A4D2H0 777 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CTAGE8P0CG41 777 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 GTF2F1P35269 517 aaKnown RBP eCLIP13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CYLC1P35663 651 aaPredicted RBP13.09□□□□□ -0.31
NPHP4-204ENST00000460696 GTF2IP78347 998 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 ARID5AQ03989 594 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 LEKR1Q6ZMV7 388 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CTAGE6Q86UF2 777 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 DHX40Q8IX18 779 aaKnown RBP13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CTAGE4Q8IX94 777 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 IGDCC4Q8TDY8 1250 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 PPP1R13BQ96KQ4 1090 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CAPZA3Q96KX2 299 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms