RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 KBTBD3Q8NAB2 608 aa27.38■■□□□ 1.97
PTPN4-207ENST00000460162 LPAR1Q92633 364 aa27.38■■□□□ 1.97
PTPN4-207ENST00000460162 FRMPD3Q5JV73 1810 aa27.38■■□□□ 1.97
PTPN4-207ENST00000460162 CYP2D7A0A087X1C5 515 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 CDK8P49336 464 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 MAP2K5Q13163 448 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 NECAB2Q7Z6G3 386 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 TANGO6Q9C0B7 1094 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 BTBD7Q9P203 1132 aa27.37■■□□□ 1.97
PTPN4-207ENST00000460162 PAWRQ96IZ0 340 aaKnown RBP27.36■■□□□ 1.97
PTPN4-207ENST00000460162 TMX2Q9Y320 296 aa27.36■■□□□ 1.97
PTPN4-207ENST00000460162 TRIOBPQ9H2D6 2365 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 SLC15A5A6NIM6 579 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 COG2Q14746 738 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 WDR78Q5VTH9 848 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 CLEC10AQ8IUN9 316 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 HOXC10Q9NYD6 342 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 IVNS1ABPQ9Y6Y0 642 aa27.35■■□□□ 1.97
PTPN4-207ENST00000460162 PTPREP23469 700 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 GRB14Q14449 540 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 CCL14Q16627 93 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 CTR9Q6PD62 1173 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 CHRDL2Q6WN34 429 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 DIS3LQ8TF46 1054 aaKnown RBP27.34■■□□□ 1.97
PTPN4-207ENST00000460162 APPBP2Q92624 585 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 VCPKMTQ9H867 229 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 OGDHLQ9ULD0 1010 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 ROBO3Q96MS0 1386 aa27.34■■□□□ 1.97
PTPN4-207ENST00000460162 SMIM22K7EJ46 135 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 EVI5O60447 810 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 ZFYP08048 801 aaPredicted RBP27.33■■□□□ 1.97
PTPN4-207ENST00000460162 HOXC6P09630 235 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 FXR1P51114 621 aaKnown RBP eCLIP27.33■■□□□ 1.97
PTPN4-207ENST00000460162 CACNB2Q08289 660 aaPredicted RBP27.33■■□□□ 1.97
PTPN4-207ENST00000460162 TSHZ3Q63HK5 1081 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 GIMAP6Q6P9H5 292 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 SIAH1Q8IUQ4 282 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 MB21D1Q8N884 522 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 STRBPQ96SI9 672 aaKnown RBP27.33■■□□□ 1.97
PTPN4-207ENST00000460162 TTC41PQ6P2S7 1318 aa27.33■■□□□ 1.97
PTPN4-207ENST00000460162 WDR46O15213 610 aaKnown RBP27.32■■□□□ 1.96
PTPN4-207ENST00000460162 KIAA1755Q5JYT7 1200 aa27.32■■□□□ 1.96
PTPN4-207ENST00000460162 RRP1P56182 461 aaKnown RBP27.31■■□□□ 1.96
PTPN4-207ENST00000460162 SBK1Q52WX2 424 aa27.31■■□□□ 1.96
PTPN4-207ENST00000460162 SHCBP1Q8NEM2 672 aa27.31■■□□□ 1.96
PTPN4-207ENST00000460162 NBPF3Q9H094 633 aa27.31■■□□□ 1.96
PTPN4-207ENST00000460162 KANSL2Q9H9L4 492 aa27.31■■□□□ 1.96
PTPN4-207ENST00000460162 PCDHB15Q9Y5E8 787 aa27.31■■□□□ 1.96
PTPN4-207ENST00000460162 RANBP2P49792 3224 aaKnown RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 RNF113AO15541 343 aaKnown RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 MNX1P50219 401 aaPredicted RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 LRRFIP1Q32MZ4 808 aaKnown RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 SPICE1Q8N0Z3 855 aa27.3■■□□□ 1.96
PTPN4-207ENST00000460162 OSBP2Q969R2 916 aa27.3■■□□□ 1.96
PTPN4-207ENST00000460162 MOV10L1Q9BXT6 1211 aaKnown RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 SPATC1LQ9H0A9 340 aa27.3■■□□□ 1.96
PTPN4-207ENST00000460162 COL11A1P12107 1806 aaPredicted RBP27.3■■□□□ 1.96
PTPN4-207ENST00000460162 GSG1L2A8MUP6 293 aa27.29■■□□□ 1.96
PTPN4-207ENST00000460162 ERC2O15083 957 aa27.29■■□□□ 1.96
PTPN4-207ENST00000460162 FLOT1O75955 427 aa27.29■■□□□ 1.96
PTPN4-207ENST00000460162 DSG3P32926 999 aa27.29■■□□□ 1.96
PTPN4-207ENST00000460162 MFSD14CQ5VZR4 134 aa27.29■■□□□ 1.96
PTPN4-207ENST00000460162 GPAA1O43292 621 aa27.28■■□□□ 1.96
PTPN4-207ENST00000460162 EEF2P13639 858 aaKnown RBP27.28■■□□□ 1.96
PTPN4-207ENST00000460162 GNAT2P19087 354 aa27.28■■□□□ 1.96
PTPN4-207ENST00000460162 CCND3P30281 292 aaPredicted RBP27.28■■□□□ 1.96
PTPN4-207ENST00000460162 C11orf49Q9H6J7 331 aa27.28■■□□□ 1.96
PTPN4-207ENST00000460162 STRNO43815 780 aa27.27■■□□□ 1.96
PTPN4-207ENST00000460162 ATG4CQ96DT6 458 aa27.27■■□□□ 1.96
PTPN4-207ENST00000460162 PRO3102Q9H379 93 aa27.27■■□□□ 1.96
PTPN4-207ENST00000460162 GOPCQ9HD26 462 aa27.27■■□□□ 1.96
PTPN4-207ENST00000460162 FLRT1Q9NZU1 646 aa27.27■■□□□ 1.96
PTPN4-207ENST00000460162 RBM27Q9P2N5 1060 aaKnown RBP27.27■■□□□ 1.96
PTPN4-207ENST00000460162 ERCC3P19447 782 aa27.26■■□□□ 1.95
PTPN4-207ENST00000460162 ATP2B2Q01814 1243 aa27.26■■□□□ 1.95
PTPN4-207ENST00000460162 PI4K2BQ8TCG2 481 aa27.26■■□□□ 1.95
PTPN4-207ENST00000460162 EPB41L4AQ9HCS5 686 aaPredicted RBP27.26■■□□□ 1.95
PTPN4-207ENST00000460162 RASA1P20936 1047 aa27.25■■□□□ 1.95
PTPN4-207ENST00000460162 ADORA2AP29274 412 aa27.25■■□□□ 1.95
PTPN4-207ENST00000460162 LHX8Q68G74 356 aa27.25■■□□□ 1.95
PTPN4-207ENST00000460162 NPLOC4Q8TAT6 608 aa27.25■■□□□ 1.95
PTPN4-207ENST00000460162 MROH8Q9H579 483 aa27.25■■□□□ 1.95
PTPN4-207ENST00000460162 MYH4Q9Y623 1939 aa27.24■■□□□ 1.95
PTPN4-207ENST00000460162 M0R2C6 588 aa27.24■■□□□ 1.95
PTPN4-207ENST00000460162 TDO2P48775 406 aa27.24■■□□□ 1.95
PTPN4-207ENST00000460162 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.24■■□□□ 1.95
PTPN4-207ENST00000460162 PFASO15067 1338 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 MSCO60682 206 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 IGHA2P01877 340 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 MX1P20591 662 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 PLS1Q14651 629 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 OLFML2BQ68BL8 750 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 DPP9Q86TI2 863 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 ABRAQ8N0Z2 381 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 MKNK2Q9HBH9 465 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 ZNF287Q9HBT7 754 aa27.23■■□□□ 1.95
PTPN4-207ENST00000460162 A0A1W2PPC1 479 aa27.22■■□□□ 1.95
PTPN4-207ENST00000460162 MINDY4BA8MYZ0 360 aa27.22■■□□□ 1.95
PTPN4-207ENST00000460162 COL6A1P12109 1028 aa27.22■■□□□ 1.95
PTPN4-207ENST00000460162 C7orf61Q8IZ16 206 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms