RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TCERG1O14776 1098 aaKnown RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 TREHO43280 583 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 IBSPP21815 317 aaPredicted RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 GSTT1P30711 240 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 ANP32AP39687 249 aaKnown RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 RHBDL3P58872 404 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 C4orf46Q504U0 113 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 GET4Q7L5D6 327 aaPredicted RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 CREBRFQ8IUR6 639 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 EGFL6Q8IUX8 553 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 GPATCH3Q96I76 525 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 HEXIM2Q96MH2 286 aaKnown RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 TMX4Q9H1E5 349 aaPredicted RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 TNKS2Q9H2K2 1166 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 GNL3LQ9NVN8 582 aaKnown RBP6.75□□□□□ -1.33
VPS41-209ENST00000457055 CACNA2D2Q9NY47 1150 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 SAMM50Q9Y512 469 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 SNX11Q9Y5W9 270 aa6.75□□□□□ -1.33
VPS41-209ENST00000457055 ENC1O14682 589 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 FARP2O94887 1054 aaPredicted RBP6.74□□□□□ -1.33
VPS41-209ENST00000457055 CALD1Q05682 793 aaKnown RBP6.74□□□□□ -1.33
VPS41-209ENST00000457055 PTPROQ16827 1216 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 HSP90AB3PQ58FF7 597 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 SLC23A3Q6PIS1 610 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 GRIN3AQ8TCU5 1115 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 SENP7Q9BQF6 1050 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 CEP44Q9C0F1 390 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 CHPF2Q9P2E5 772 aa6.74□□□□□ -1.33
VPS41-209ENST00000457055 FBXO9Q9UK97 447 aaPredicted RBP6.74□□□□□ -1.33
VPS41-209ENST00000457055 GNEQ9Y223 722 aaKnown RBP6.74□□□□□ -1.33
VPS41-209ENST00000457055 WDR97A6NE52 1622 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 TOP2BQ02880 1626 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 FBXO24O75426 580 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 PAGE1O75459 146 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 TRIM37O94972 964 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 ZNF16P17020 682 aaPredicted RBP6.73□□□□□ -1.33
VPS41-209ENST00000457055 BDNFP23560 247 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 NTF4P34130 210 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 IKZF1Q13422 519 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 ZNF124Q15973 351 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 LCE1DQ5T752 114 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 FAM214BQ7L5A3 538 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 UBE3DQ7Z6J8 389 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 SNRNP27Q8WVK2 155 aaKnown RBP6.73□□□□□ -1.33
VPS41-209ENST00000457055 TMEM40Q8WWA1 233 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 ASB11Q8WXH4 323 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 PRDM7Q9NQW5 492 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 SWAP70Q9UH65 585 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 RPGRIP1LQ68CZ1 1315 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 GRIN2AQ12879 1464 aa6.73□□□□□ -1.33
VPS41-209ENST00000457055 IGF2BP3O00425 579 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS41-209ENST00000457055 BMP6P22004 513 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 SSR1P43307 286 aaKnown RBP6.72□□□□□ -1.33
VPS41-209ENST00000457055 MAPK8P45983 427 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 GYS2P54840 703 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 PKN1Q16512 942 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 LLGL2Q6P1M3 1020 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 CDC37L1Q7L3B6 337 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 C11orf96Q7Z7L8 435 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 C12orf40Q86WS4 652 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 SPACA3Q8IXA5 215 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 FBF1Q8TES7 1133 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 SRCIN1Q9C0H9 1055 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 GABBR1Q9UBS5 961 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 PPM1HQ9ULR3 514 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 TPX2Q9ULW0 747 aaKnown RBP6.72□□□□□ -1.33
VPS41-209ENST00000457055 KIF21BO75037 1637 aa6.72□□□□□ -1.33
VPS41-209ENST00000457055 GNAT3A8MTJ3 354 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 FANCGO15287 622 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 SCP2P22307 547 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 ZP2Q05996 745 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 ZBTB37Q5TC79 503 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 DDX46Q7L014 1031 aaKnown RBP6.71□□□□□ -1.34
VPS41-209ENST00000457055 KSR1Q8IVT5 923 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 CCDC146Q8IYE0 955 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 FLAD1Q8NFF5 587 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 SCYL1Q96KG9 808 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 PCDHA4Q9UN74 947 aa6.71□□□□□ -1.34
VPS41-209ENST00000457055 NUP160Q12769 1436 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 TLDC2A0PJX2 215 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 RING1Q06587 406 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 BIRC2Q13490 618 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 LRRC14Q15048 493 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 NKPD1Q17RQ9 610 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 NBPF6Q5VWK0 638 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 NBPF5PQ86XG9 351 aaPredicted RBP6.7□□□□□ -1.34
VPS41-209ENST00000457055 KCT2Q8NC54 265 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 ZCRB1Q8TBF4 217 aaKnown RBP6.7□□□□□ -1.34
VPS41-209ENST00000457055 ELMO3Q96BJ8 720 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 NBPF4Q96M43 638 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 OSBPL7Q9BZF2 842 aa6.7□□□□□ -1.34
VPS41-209ENST00000457055 PRDM5Q9NQX1 630 aaPredicted RBP6.7□□□□□ -1.34
VPS41-209ENST00000457055 DBX1A6NMT0 343 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 EOMESO95936 686 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 CLCN7P51798 805 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 POU5F1Q01860 360 aaKnown RBP6.69□□□□□ -1.34
VPS41-209ENST00000457055 ZRSR2Q15696 482 aaKnown RBP6.69□□□□□ -1.34
VPS41-209ENST00000457055 RASIP1Q5U651 963 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 ZSWIM9Q86XI8 627 aa6.69□□□□□ -1.34
VPS41-209ENST00000457055 SETDB2Q96T68 719 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms