RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 BOLA2-SMG1P6H3BVE0 249 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 SLC27A2O14975 620 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 FGAP02671 866 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 S100BP04271 92 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 CRKP46108 304 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 TKFCQ3LXA3 575 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 ARHGEF25Q86VW2 580 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 SNX29Q8TEQ0 813 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 JDP2Q8WYK2 163 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 MMTAG2Q9BU76 263 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 PDGFDQ9GZP0 370 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 COMMD8Q9NX08 183 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 GLI3P10071 1580 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 ADAMTS13Q76LX8 1427 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 SMAD7O15105 426 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 KINO60870 393 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 ENPP1P22413 925 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 IDH3AP50213 366 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 POU5F1BQ06416 359 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 SEPT6Q14141 434 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 ZCCHC8Q6NZY4 707 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 DEFB132Q7Z7B7 95 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 C1orf127Q8N9H9 656 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 C3orf58Q8NDZ4 430 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 GOLGA1Q92805 767 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 DDX17Q92841 729 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 BHMTQ93088 406 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 AIDAQ96BJ3 306 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 OTUD5Q96G74 571 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 VMP1Q96GC9 406 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 ELP3Q9H9T3 547 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 HOXC10Q9NYD6 342 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 CNTN3Q9P232 1028 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 TCEAL9Q9UHQ7 104 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 ACAD8Q9UKU7 415 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 LEMD3Q9Y2U8 911 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 GJA3Q9Y6H8 435 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 NRXN3Q9Y4C0 1643 aa5.59□□□□□ -1.51
CCDC88A-209ENST00000456975 TMCO5BA8MYB1 307 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 GIPC1O14908 333 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 PRC1O43663 620 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 HCLS1P14317 486 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 YY1P25490 414 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 PTPN5P54829 565 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 GSCP56915 257 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 CLN3Q13286 438 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 SIM2Q14190 667 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC93Q567U6 631 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 RC3H1Q5TC82 1133 aaKnown RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 MSL1Q68DK7 614 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 KCNV1Q6PIU1 500 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 WAPLQ7Z5K2 1190 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 RELL1Q8IUW5 271 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 RAVER1Q8IY67 606 aaKnown RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 NBPF15Q8N660 670 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 SMARCC1Q92922 1105 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 MPP4Q96JB8 637 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 TMEM74Q96NL1 305 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 MPHOSPH6Q99547 160 aaKnown RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 IER2Q9BTL4 223 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 FAM126AQ9BYI3 521 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 CHRDQ9H2X0 955 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 ZNF395Q9H8N7 513 aaPredicted RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 IL21Q9HBE4 155 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 BLOC1S6Q9UL45 172 aa5.59□□□□□ -1.52
CCDC88A-209ENST00000456975 PIK3R4Q99570 1358 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC144AA2RUR9 1427 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 PLCH1Q4KWH8 1693 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 NEXMIFQ5QGS0 1516 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 TRIM37O94972 964 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ADH1CP00326 375 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 LDHAP00338 332 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 PLA2G4AP47712 749 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 SOX9P48436 509 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ZBED6P86452 979 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 SEPT2Q15019 361 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 PPP2R5AQ15172 486 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 C21orf62-AS1Q17RA5 79 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ARMC3Q5W041 872 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 PGBD3Q8N328 593 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 C7orf43Q8WVR3 580 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 GIMAP1Q8WWP7 306 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CASS4Q9NQ75 786 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 RTCBQ9Y3I0 505 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 R3HCC1Q9Y3T6 440 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 N6AMT1Q9Y5N5 214 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 KCNMB2Q9Y691 235 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 DHX57Q6P158 1386 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 BCL9LQ86UU0 1499 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 TMEM110-MUSTN1A8MSY1 372 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 DYNC1I1O14576 645 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 RBP3P10745 1247 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 VCAM1P19320 739 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 IL4RP24394 825 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 HOXD10P28358 340 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ZNF131P52739 623 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 FCGRTP55899 365 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 SQSTM1Q13501 440 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 UBE4AQ14139 1066 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms