RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ENOX1Q8TC92 643 aaKnown RBP17.21■□□□□ 0.35
LDLR-202ENST00000455727 IL17RBQ9NRM6 502 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 BAZ2BQ9UIF8 2168 aaKnown RBP17.21■□□□□ 0.35
LDLR-202ENST00000455727 CTIFO43310 598 aaKnown RBP17.2■□□□□ 0.34
LDLR-202ENST00000455727 NRDCO43847 1150 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 SERPINC1P01008 464 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 SLFN14P0C7P3 912 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 SFPQP23246 707 aaKnown RBP eCLIP17.2■□□□□ 0.34
LDLR-202ENST00000455727 CALML3P27482 149 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 GNAQP50148 359 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 NLRP5P59047 1200 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 SH3RF1Q7Z6J0 888 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 CCAR2Q8N163 923 aaKnown RBP17.2■□□□□ 0.34
LDLR-202ENST00000455727 FANCLQ9NW38 375 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 PRR29P0C7W0 189 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 IL1R1P14778 569 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 GPSM2P81274 684 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 MKNK2Q9HBH9 465 aa17.2■□□□□ 0.34
LDLR-202ENST00000455727 BBOX1O75936 387 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 GYS1P13807 737 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 ST5P78524 1137 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 PDILTQ8N807 584 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 PNMA1Q8ND90 353 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 RBM17Q96I25 401 aaKnown RBP17.19■□□□□ 0.34
LDLR-202ENST00000455727 CD209Q9NNX6 404 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 ERCC5P28715 1186 aaPredicted RBP17.19■□□□□ 0.34
LDLR-202ENST00000455727 GRM4Q14833 912 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 DIXDC1Q155Q3 683 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 PTPN14Q15678 1187 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 FAM177A1Q8N128 213 aaPredicted RBP17.19■□□□□ 0.34
LDLR-202ENST00000455727 RTFDC1Q9BY42 306 aaPredicted RBP17.19■□□□□ 0.34
LDLR-202ENST00000455727 ZNF287Q9HBT7 754 aa17.19■□□□□ 0.34
LDLR-202ENST00000455727 KIF2AO00139 706 aaPredicted RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 PTGDRQ13258 359 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 ZNF174Q15697 407 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 GRIK5Q16478 980 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 CEP135Q66GS9 1140 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 VSTM4Q8IW00 320 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 SEPT12Q8IYM1 358 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 SYMPKQ92797 1274 aaKnown RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 EPSTI1Q96J88 318 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 PYM1Q9BRP8 204 aaKnown RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 PODXL2Q9NZ53 605 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 GPR75-ASB3A0A0A6YYF3 556 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 PSDA5PKW4 1024 aaPredicted RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 USP27XA6NNY8 438 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 WNT7AO00755 349 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 SERPINB2P05120 415 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 ZNF18P17022 549 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 HOXA10P31260 410 aaPredicted RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 CFAP100Q494V2 611 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 SLC27A3Q5K4L6 730 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 ZNF444Q8N0Y2 327 aaPredicted RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 TGFBRAP1Q8WUH2 860 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 DPF2Q92785 391 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 DYNLL2Q96FJ2 89 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 FAM163AQ96GL9 167 aaPredicted RBP17.18■□□□□ 0.34
LDLR-202ENST00000455727 GGA1Q9UJY5 639 aa17.18■□□□□ 0.34
LDLR-202ENST00000455727 A0A087X0B3 334 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 TSPY3P0CV98 308 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 TSPY8P0CW00 308 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 NOM1Q5C9Z4 860 aaKnown RBP17.17■□□□□ 0.34
LDLR-202ENST00000455727 MEX3CQ5U5Q3 659 aaKnown RBP17.17■□□□□ 0.34
LDLR-202ENST00000455727 CCDC112Q8NEF3 446 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 DHX58Q96C10 678 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 AFF2P51816 1311 aa17.17■□□□□ 0.34
LDLR-202ENST00000455727 DDX60LQ5H9U9 1706 aaKnown RBP17.17■□□□□ 0.34
LDLR-202ENST00000455727 UFL1O94874 794 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 PLCG2P16885 1265 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 PLCD1P51178 756 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 ARL6IP4Q66PJ3 421 aaKnown RBP17.16■□□□□ 0.34
LDLR-202ENST00000455727 GALNT17Q6IS24 598 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 SLC51AQ86UW1 340 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 GRAMD1CQ8IYS0 662 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 PAGE5Q96GU1 130 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 GSDMAQ96QA5 445 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 MAD2L2Q9UI95 211 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 TRPC5Q9UL62 973 aaPredicted RBP17.16■□□□□ 0.34
LDLR-202ENST00000455727 FMR1Q06787 632 aaKnown RBP eCLIP17.16■□□□□ 0.346e-7■□□□□ 9.2
LDLR-202ENST00000455727 SYCP1Q15431 976 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 PIK3AP1Q6ZUJ8 805 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 SLF2Q8IX21 1173 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 BLIDQ8IZY5 108 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 LZTS2Q9BRK4 669 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 PCDHA4Q9UN74 947 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 NFE2L3Q9Y4A8 694 aa17.16■□□□□ 0.34
LDLR-202ENST00000455727 TUBB4AP04350 444 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 VEGFAP15692 232 aaPredicted RBP17.15■□□□□ 0.34
LDLR-202ENST00000455727 E4F1Q66K89 784 aaPredicted RBP17.15■□□□□ 0.34
LDLR-202ENST00000455727 CRAMP1Q96RY5 1269 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 TMX1Q9H3N1 280 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 KLRG2A4D1S0 409 aaPredicted RBP17.15■□□□□ 0.34
LDLR-202ENST00000455727 RASA1P20936 1047 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 DPYDQ12882 1025 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 ZNF710Q8N1W2 664 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 TBC1D22AQ8WUA7 517 aa17.15■□□□□ 0.34
LDLR-202ENST00000455727 VWA3AA6NCI4 1184 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 USP17L3A6NCW0 530 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 USP17L4A6NCW7 530 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 PALM3A6NDB9 673 aaPredicted RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms