RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	FLT3LG	P49771	235 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	PRMT2	P55345	433 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	BACE1	P56817	501 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	ABCB5	Q2M3G0	1257 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	CERKL	Q49MI3	558 aa	Predicted RBP	10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	EHD4	Q9H223	541 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	PCDHB15	Q9Y5E8	787 aa		10.47	□□□□□ -0.73
RFX3-209	ENST00000451859	CYP2D7	A0A087X1C5	515 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	USP17L10	C9JJH3	530 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	ELN	P15502	786 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	SHMT1	P34896	483 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	FAM110C	Q1W6H9	321 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	SH3D19	Q5HYK7	790 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	TATDN1	Q6P1N9	297 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	TMED8	Q6PL24	325 aa	Predicted RBP	10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	SLC44A5	Q8NCS7	719 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	DYNLL2	Q96FJ2	89 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	GPATCH3	Q96I76	525 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	CRBN	Q96SW2	442 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	PAGR1	Q9BTK6	254 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	DCTPP1	Q9H773	170 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	CABP5	Q9NP86	173 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	ECHDC1	Q9NTX5	307 aa		10.46	□□□□□ -0.73
RFX3-209	ENST00000451859	FRMPD3	Q5JV73	1810 aa		10.46	□□□□□ -0.74
RFX3-209	ENST00000451859	RLF	Q13129	1914 aa		10.46	□□□□□ -0.74
RFX3-209	ENST00000451859	ALPK3	Q96L96	1907 aa		10.46	□□□□□ -0.74
RFX3-209	ENST00000451859	CEP290	O15078	2479 aa		10.46	□□□□□ -0.74
RFX3-209	ENST00000451859	C19orf81	C9J6K1	198 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	SMIM22	K7EJ46	135 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	ADCY3	O60266	1144 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	CCL5	P13501	91 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	GCLC	P48506	637 aa	Predicted RBP	10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	HERVK_113	P62684	666 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	SEPT2	Q15019	361 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	PPP4R3B	Q5MIZ7	849 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L2	Q6R6M4	530 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	CLEC10A	Q8IUN9	316 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	ACER1	Q8TDN7	264 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	COA7	Q96BR5	231 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	P2RX7	Q99572	595 aa	Known RBP	10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	EMILIN3	Q9NT22	766 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	GINM1	Q9NU53	330 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	SLC4A4	Q9Y6R1	1079 aa		10.45	□□□□□ -0.74
RFX3-209	ENST00000451859	PLXNA1	Q9UIW2	1896 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	INHA	P05111	366 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	UBXN2A	P68543	259 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	FOXK1	P85037	733 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	ZSCAN25	Q6NSZ9	544 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	AMOTL1	Q8IY63	956 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	STK11IP	Q8N1F8	1099 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	DDRGK1	Q96HY6	314 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	PUS7L	Q9H0K6	701 aa	Known RBP	10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	RNF208	Q9H0X6	261 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	UNC93B1	Q9H1C4	597 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	GREB1L	Q9C091	1923 aa	Predicted RBP	10.44	□□□□□ -0.74
RFX3-209	ENST00000451859		A0A0G2JMZ2	1700 aa		10.44	□□□□□ -0.74
RFX3-209	ENST00000451859	RGS20	O76081	388 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	GUCY1A2	P33402	732 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	GABPA	Q06546	454 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	UBE3C	Q15386	1083 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	PRPF38B	Q5VTL8	546 aa	Known RBP	10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	CCAR1	Q8IX12	1150 aa	Known RBP	10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	CWC22	Q9HCG8	908 aa	Known RBP	10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	TXNRD2	Q9NNW7	524 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	ATP8A2	Q9NTI2	1148 aa		10.43	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L12	C9JPN9	530 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L21	D6R901	530 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	AKR1B1	P15121	316 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	VCAM1	P19320	739 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	HOXA7	P31268	230 aa	Predicted RBP	10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	ATP2B2	Q01814	1243 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	WDR78	Q5VTH9	848 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	KBTBD3	Q8NAB2	608 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	GPRC5A	Q8NFJ5	357 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	SHISA4	Q96DD7	197 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	KCNK17	Q96T54	332 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	KIAA1683	Q9H0B3	1180 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	RPAP3	Q9H6T3	665 aa	Predicted RBP	10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	MORF4L1	Q9UBU8	362 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	SWAP70	Q9UH65	585 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859	VPS9D1	Q9Y2B5	631 aa		10.42	□□□□□ -0.74
RFX3-209	ENST00000451859		A0A1W2PRG0	241 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L15	C9J2P7	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L13	C9JLJ4	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L11	C9JVI0	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L18	D6R9N7	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L22	D6RA61	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L17	D6RBQ6	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L19	D6RCP7	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L20	D6RJB6	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859		M0R2C6	588 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	CYP2B6	P20813	491 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	CDK8	P49336	464 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP14	P54578	494 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	ERVK-9	P63128	1117 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	ERVK-24	P63145	666 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	USP17L24	Q0WX57	530 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	C12orf60	Q5U649	245 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms