RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ERVK-24P63145 666 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 MLLT1Q03111 559 aaPredicted RBP15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 ALX1Q15699 326 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 ZNF589Q86UQ0 364 aaPredicted RBP15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 SPICE1Q8N0Z3 855 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 GTF3C2Q8WUA4 911 aaPredicted RBP15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 LPAR1Q92633 364 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 SH2D4AQ9H788 454 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 VCPKMTQ9H867 229 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 ZNF287Q9HBT7 754 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 INCENPQ9NQS7 918 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 GJD2Q9UKL4 321 aa15.18■□□□□ 0.02
PRPF40A-203ENST00000448428 PLXNB2O15031 1838 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 MYH4Q9Y623 1939 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 RBBP6Q7Z6E9 1792 aaKnown RBP15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 CNMDO75829 334 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 MYCP01106 439 aaPredicted RBP15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 FGAP02671 866 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 SLC3A2P08195 630 aaKnown RBP15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 CTDSPL2Q05D32 466 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 PDE4BQ07343 736 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 COG2Q14746 738 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 LBX2Q6XYB7 198 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 HOXC10Q9NYD6 342 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 RABGAP1Q9Y3P9 1069 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 HTTP42858 3142 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 PARP14Q460N5 1801 aa15.17■□□□□ 0.02
PRPF40A-203ENST00000448428 IGKV6D-41A0A0C4DH26 115 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 SPDYE16A6NNV3 312 aaPredicted RBP15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 ADCY3O60266 1144 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 HSPD1P10809 573 aaKnown RBP15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 IRF5Q13568 498 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 TMEM106CQ9BVX2 250 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 TANGO6Q9C0B7 1094 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 PORCNQ9H237 461 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 BTBD7Q9P203 1132 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 NYAP2Q9P242 653 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 TACC3Q9Y6A5 838 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 CCDC171Q6TFL3 1326 aa15.16■□□□□ 0.02
PRPF40A-203ENST00000448428 WDR46O15213 610 aaKnown RBP15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 ELNP15502 786 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 TFAP4Q01664 338 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 MTFR1Q15390 333 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 FAM47AQ5JRC9 791 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 TTC22Q5TAA0 569 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 CWC27Q6UX04 472 aaKnown RBP15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 SLAIN1Q8ND83 568 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 NEDD1Q8NHV4 660 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 PXYLP1Q8TE99 480 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 CEP95Q96GE4 821 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 GOPCQ9HD26 462 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 DIAPH3Q9NSV4 1193 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 BIN2Q9UBW5 565 aaPredicted RBP15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 CLIP2Q9UDT6 1046 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 ANAPC4Q9UJX5 808 aa15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.15■□□□□ 0.02
PRPF40A-203ENST00000448428 RAD21O60216 631 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 FLOT1O75955 427 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 TSPY3P0CV98 308 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 TSPY8P0CW00 308 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 GSPT1P15170 499 aaKnown RBP15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 EN2P19622 333 aaPredicted RBP15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 MAPK4P31152 587 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 DSG3P32926 999 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 CCAR1Q8IX12 1150 aaKnown RBP15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 MKL1Q969V6 931 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 MTMR4Q9NYA4 1195 aa15.14■□□□□ 0.01
PRPF40A-203ENST00000448428 KIAA0100Q14667 2235 aaKnown RBP15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 COL11A1P12107 1806 aaPredicted RBP15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 F5H6K3 240 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 HIP1O00291 1037 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 FGRP09769 529 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 CENPFP49454 3210 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 MFAP1P55081 439 aaKnown RBP15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 CCNA1P78396 465 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 KLRC3Q07444 240 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 GPR142Q7Z601 462 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 PLEKHH3Q7Z736 793 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 FBXO28Q9NVF7 368 aa15.13■□□□□ 0.01
PRPF40A-203ENST00000448428 A0A0G2JMZ2 1700 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 TTLL1O95922 423 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 CCL5P13501 91 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 UBXN2AP68543 259 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 MORN1Q5T089 497 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 FAM83BQ5T0W9 1011 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 SAMD1Q6SPF0 538 aaPredicted RBP15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 USP6NLQ92738 828 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 ATG4CQ96DT6 458 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 NUP88Q99567 741 aaPredicted RBP15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 NUDT12Q9BQG2 462 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 IL17RBQ9NRM6 502 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 ADAMTS5Q9UNA0 930 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 ZMYM6O95789 1325 aa15.12■□□□□ 0.01
PRPF40A-203ENST00000448428 PLIN4Q96Q06 1357 aa15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 ORC4O43929 436 aa15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 RANBP6O60518 1105 aaKnown RBP15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 NDUFB10O96000 172 aa15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 INHAP05111 366 aa15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 CYP2B6P20813 491 aa15.11■□□□□ 0.01
PRPF40A-203ENST00000448428 HAND2P61296 217 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms