RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ARHGEF35A5YM69 484 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 GCOM1H8Y6P7 765 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 POLR2MP0CAP2 368 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 MYL5Q02045 173 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 TEX35Q5T0J7 233 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 FOXP4Q8IVH2 680 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 STK24Q9Y6E0 443 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 MYO3BQ8WXR4 1341 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 DKC1O60832 514 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 NCBP1Q09161 790 aaKnown RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 MCTP2Q6DN12 878 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CCDC186Q7Z3E2 898 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 DNM3Q9UQ16 869 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 URI1O94763 535 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 FMNL1O95466 1100 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 XRCC6P12956 609 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CASQ1P31415 396 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 DNA2P51530 1060 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 NEK8Q86SG6 692 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 TDRD3Q9H7E2 651 aaKnown RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 ABCC12Q96J65 1359 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CCDC172P0C7W6 258 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CYP2D6P10635 497 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 LIFRP42702 1097 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 PABPC4Q13310 644 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 R3HDM1Q15032 1099 aaKnown RBP8.33□□□□□ -1.08
SYNE1-213ENST00000448038 ADALQ6DHV7 355 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CNNM4Q6P4Q7 775 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D5Q92609 795 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CCPG1Q9ULG6 757 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 MAPK8IP1Q9UQF2 711 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 TRAF5O00463 557 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 RPL13P26373 211 aaKnown RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 PPP1R2P41236 205 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D16Q8TBP0 767 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 C16orf45Q96MC5 204 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 AMNQ9BXJ7 453 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 IFNKQ9P0W0 207 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 UTYO14607 1347 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 RFX7Q2KHR2 1363 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 A0A0G2JLW4 131 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 GAS7O60861 476 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 SLC16A2P36021 539 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 PRR16Q569H4 304 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 ARHGEF16Q5VV41 709 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 FAM212AQ96EL1 285 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TMX1Q9H3N1 280 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 CTNND2Q9UQB3 1225 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 MROH7-TTC4A0A0A0MT08 1334 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 CCDC169A6NNP5 214 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TNNT1P13805 278 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 UBXN1Q04323 297 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 EZH2Q15910 746 aaKnown RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 SKIDA1Q1XH10 827 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 BRDTQ58F21 947 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 USP17L2Q6R6M4 530 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 STAG1Q8WVM7 1258 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 STAMQ92783 540 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TESPA1A2RU30 521 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TNNT3P45378 269 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 NOP2P46087 812 aaKnown RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 CUL4AQ13619 759 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 POSTNQ15063 836 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 DYMQ7RTS9 669 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 NLRX1Q86UT6 975 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 MCF2L2Q86YR7 1114 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D10CQ8IV04 446 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 DCP1AQ9NPI6 582 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 GPHNQ9NQX3 736 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-213ENST00000448038 KIF1AQ12756 1690 aa8.32□□□□□ -1.08
SYNE1-213ENST00000448038 BMP3P12645 472 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 SMTNP53814 917 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 MAEAQ7L5Y9 396 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 IMPG2Q9BZV3 1241 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 PNMA2Q9UL42 364 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 ATP6V0A2Q9Y487 856 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 LARGE1O95461 756 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 UBXN4Q92575 508 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 KIF13AQ9H1H9 1805 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 IFNAR1P17181 557 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 TECP42680 631 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 USP14P54578 494 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D10BQ4KMP7 808 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-213ENST00000448038 HERC4Q5GLZ8 1057 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-213ENST00000448038 CEP135Q66GS9 1140 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 UBN2Q6ZU65 1347 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 ANKRD35Q8N283 1001 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF830Q96NB3 372 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-213ENST00000448038 AZI2Q9H6S1 392 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 PCDHA12Q9UN75 941 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 GOLGA6L9A6NEM1 432 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 SKILP12757 684 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 RAD51AP2Q09MP3 1159 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 SLC15A2Q16348 729 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 GNPTABQ3T906 1256 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 ALS2CR12Q96Q35 445 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 INCENPQ9NQS7 918 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 ERLIN1O75477 346 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 OR52Z1P0C646 297 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 CYLC1P35663 651 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms