RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SYNE3Q6ZMZ3 975 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 ZNF589Q86UQ0 364 aaPredicted RBP21.56■■□□□ 1.04
HMGA1-205ENST00000447654 CCDC13Q8IYE1 715 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 C3orf20Q8ND61 904 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 AENQ8WTP8 325 aaKnown RBP21.56■■□□□ 1.04
HMGA1-205ENST00000447654 TCP11Q8WWU5 503 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 FSD1Q9BTV5 496 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 TEX13AQ9BXU3 409 aaPredicted RBP21.56■■□□□ 1.04
HMGA1-205ENST00000447654 EPN3Q9H201 632 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 CCDC9Q9Y3X0 531 aaKnown RBP21.56■■□□□ 1.04
HMGA1-205ENST00000447654 DISP2A7MBM2 1401 aa21.56■■□□□ 1.04
HMGA1-205ENST00000447654 PPP6R2O75170 966 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 CCNHP51946 323 aaPredicted RBP21.55■■□□□ 1.04
HMGA1-205ENST00000447654 ANO1Q5XXA6 986 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 IQCEQ6IPM2 695 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 CCDC70Q6NSX1 233 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 CCDC26Q8TAB7 109 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 PSMD14O00487 310 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 PES1O00541 588 aaKnown RBP21.55■■□□□ 1.04
HMGA1-205ENST00000447654 SLC39A14Q15043 492 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 RBBP5Q15291 538 aaKnown RBP21.55■■□□□ 1.04
HMGA1-205ENST00000447654 CALR3Q96L12 384 aaKnown RBP21.55■■□□□ 1.04
HMGA1-205ENST00000447654 ITGB4P16144 1822 aa21.55■■□□□ 1.04
HMGA1-205ENST00000447654 TTC36A6NLP5 189 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 SLMAPQ14BN4 828 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 LRRC24Q50LG9 513 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 RSRC1Q96IZ7 334 aaKnown RBP21.54■■□□□ 1.04
HMGA1-205ENST00000447654 ROBO1Q9Y6N7 1651 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 ATP5JP18859 108 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 TRIML1Q8N9V2 468 aa21.54■■□□□ 1.04
HMGA1-205ENST00000447654 MFAP3LO75121 409 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 APBA1Q02410 837 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 ISCA1Q9BUE6 129 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 EHD4Q9H223 541 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 WWC3Q9ULE0 1092 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 NFE2L3Q9Y4A8 694 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 ITIH6Q6UXX5 1313 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 COL16A1Q07092 1604 aaPredicted RBP21.53■■□□□ 1.04
HMGA1-205ENST00000447654 NAA35Q5VZE5 725 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 KDM7AQ6ZMT4 941 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 FAM43BQ6ZT52 329 aaPredicted RBP21.53■■□□□ 1.04
HMGA1-205ENST00000447654 FBXL16Q8N461 479 aa21.53■■□□□ 1.04
HMGA1-205ENST00000447654 CDC5LQ99459 802 aaKnown RBP21.53■■□□□ 1.04
HMGA1-205ENST00000447654 PUS3Q9BZE2 481 aaKnown RBP21.53■■□□□ 1.04
HMGA1-205ENST00000447654 ANKRD18BA2A2Z9 1011 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 PBX1P40424 430 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 TIMM10P62072 90 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 PAPD7Q5XG87 772 aaKnown RBP21.52■■□□□ 1.04
HMGA1-205ENST00000447654 CCDC102BQ68D86 513 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 NCAPH2Q6IBW4 605 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 CYB5D1Q6P9G0 228 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 SYNE4Q8N205 404 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 P3H4Q92791 437 aa21.52■■□□□ 1.04
HMGA1-205ENST00000447654 MROH7-TTC4A0A0A0MT08 1334 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 CDCA2Q69YH5 1023 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 C6orf89Q6UWU4 347 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 C1orf131Q8NDD1 294 aaKnown RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 CTAGE1Q96RT6 745 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 MPHOSPH10O00566 681 aaKnown RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 IPO7O95373 1038 aaKnown RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 GCKP35557 465 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 PRPHP41219 470 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 EXOSC10Q01780 885 aaKnown RBP21.51■■□□□ 1.03
HMGA1-205ENST00000447654 TCIRG1Q13488 830 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 PNOCQ13519 176 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 FILIP1LQ4L180 1135 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 NT5DC1Q5TFE4 455 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 CEP57Q86XR8 500 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 LAMA4Q16363 1823 aa21.51■■□□□ 1.03
HMGA1-205ENST00000447654 ERCC5P28715 1186 aaPredicted RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 RBL2Q08999 1139 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 HOMEZQ8IX15 550 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 FUKQ8N0W3 1084 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 CCDC85AQ96PX6 553 aaPredicted RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 SEC62Q99442 399 aaKnown RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 SAR1BQ9Y6B6 198 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 SEMA3EO15041 775 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 SNUPNO95149 360 aaKnown RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 NEFHP12036 1026 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 GBP2P32456 591 aaPredicted RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 FOSBP53539 338 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 ITIH3Q06033 890 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 NAA25Q14CX7 972 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 HLFQ16534 295 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 RESP18Q5W5W9 173 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 ZNF473Q8WTR7 871 aaKnown RBP21.5■■□□□ 1.03
HMGA1-205ENST00000447654 FAM89AQ96GI7 184 aa21.5■■□□□ 1.03
HMGA1-205ENST00000447654 BCL9O00512 1426 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 MYBL2P10244 700 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 PDCD2Q16342 344 aaPredicted RBP21.49■■□□□ 1.03
HMGA1-205ENST00000447654 ZNF662Q6ZS27 426 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 DDX46Q7L014 1031 aaKnown RBP21.49■■□□□ 1.03
HMGA1-205ENST00000447654 METTL16Q86W50 562 aaKnown RBP21.49■■□□□ 1.03
HMGA1-205ENST00000447654 EHBP1Q8NDI1 1231 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 SAAL1Q96ER3 474 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 C8orf76Q96K31 380 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 CCDC114Q96M63 670 aa21.49■■□□□ 1.03
HMGA1-205ENST00000447654 COL14A1Q05707 1796 aaKnown RBP21.49■■□□□ 1.03
HMGA1-205ENST00000447654 CYP21A2P08686 494 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms