RNA–Protein interactions for RNA: ENST00000444533.5

SSBP3-208, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-208ENST00000444533 LAMA4Q16363 1823 aa16.6■□□□□ 0.25
SSBP3-208ENST00000444533 NEDD4P46934 1319 aa16.6■□□□□ 0.25
SSBP3-208ENST00000444533 PHIPQ8WWQ0 1821 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 E7EWF7 191 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 CRHR2Q13324 411 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 NECTIN1Q15223 517 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 CLEC10AQ8IUN9 316 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 GTF3C2Q8WUA4 911 aaPredicted RBP16.59■□□□□ 0.25
SSBP3-208ENST00000444533 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.59■□□□□ 0.25
SSBP3-208ENST00000444533 CFHR5Q9BXR6 569 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 TANGO6Q9C0B7 1094 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 NBPF3Q9H094 633 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 EMILIN3Q9NT22 766 aa16.59■□□□□ 0.25
SSBP3-208ENST00000444533 IGKV6D-41A0A0C4DH26 115 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 A0A1W2PRG0 241 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 WDR46O15213 610 aaKnown RBP16.58■□□□□ 0.24
SSBP3-208ENST00000444533 FOXN1O15353 648 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 TOP1P11387 765 aaKnown RBP16.58■□□□□ 0.24
SSBP3-208ENST00000444533 VCAM1P19320 739 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 HOXA7P31268 230 aaPredicted RBP16.58■□□□□ 0.24
SSBP3-208ENST00000444533 KIF22Q14807 665 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 ARHGEF6Q15052 776 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 TREML2Q5T2D2 321 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 GPAT2Q6NUI2 795 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 SPICE1Q8N0Z3 855 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 MKL1Q969V6 931 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 ZSCAN10Q96SZ4 725 aaPredicted RBP16.58■□□□□ 0.24
SSBP3-208ENST00000444533 RPAP3Q9H6T3 665 aaPredicted RBP16.58■□□□□ 0.24
SSBP3-208ENST00000444533 ZSWIM5Q9P217 1185 aa16.58■□□□□ 0.24
SSBP3-208ENST00000444533 F5H6K3 240 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 TLR2O60603 784 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
SSBP3-208ENST00000444533 GCLCP48506 637 aaPredicted RBP16.57■□□□□ 0.24
SSBP3-208ENST00000444533 KLRC3Q07444 240 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 MOGSQ13724 837 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 DGKHQ86XP1 1220 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 LRRC47Q8N1G4 583 aaKnown RBP16.57■□□□□ 0.24
SSBP3-208ENST00000444533 ASCC2Q9H1I8 757 aaPredicted RBP16.57■□□□□ 0.24
SSBP3-208ENST00000444533 KAT14Q9H8E8 782 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 HOXC10Q9NYD6 342 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 TSKSQ9UJT2 592 aa16.57■□□□□ 0.24
SSBP3-208ENST00000444533 CTDP1Q9Y5B0 961 aaPredicted RBP16.57■□□□□ 0.24
SSBP3-208ENST00000444533 IFIT3O14879 490 aaKnown RBP16.56■□□□□ 0.24
SSBP3-208ENST00000444533 NMT2O60551 498 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 MCM5P33992 734 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 IKQ13123 557 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-208ENST00000444533 NOM1Q5C9Z4 860 aaKnown RBP16.56■□□□□ 0.24
SSBP3-208ENST00000444533 IFIT1BQ5T764 474 aaKnown RBP16.56■□□□□ 0.24
SSBP3-208ENST00000444533 SIAH1Q8IUQ4 282 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 CCAR1Q8IX12 1150 aaKnown RBP16.56■□□□□ 0.24
SSBP3-208ENST00000444533 GMCL1P1Q8NEA9 526 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 ZKSCAN3Q9BRR0 538 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 IL17RBQ9NRM6 502 aa16.56■□□□□ 0.24
SSBP3-208ENST00000444533 PTPRFP10586 1907 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 TNKSO95271 1327 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 GPR25O00155 361 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 FKTNO75072 461 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 FLOT1O75955 427 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 CYP2C8P10632 490 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 PSMA5P28066 241 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 SLC1A4P43007 532 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 LBX1P52954 281 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 FGD1P98174 961 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 DGKZQ13574 1117 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 COG2Q14746 738 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 SLFN13Q68D06 897 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 CATSPERGQ6ZRH7 1159 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 UPF2Q9HAU5 1272 aaKnown RBP16.55■□□□□ 0.24
SSBP3-208ENST00000444533 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 TACC3Q9Y6A5 838 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 LOC285556D6RIA3 1793 aa16.55■□□□□ 0.24
SSBP3-208ENST00000444533 NDUFB10O96000 172 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 HSPA8P11142 646 aaKnown RBP16.54■□□□□ 0.24
SSBP3-208ENST00000444533 HSPA4P34932 840 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 SP3Q02447 781 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 WTAPQ15007 396 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 CCDC96Q2M329 555 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 SAMD1Q6SPF0 538 aaPredicted RBP16.54■□□□□ 0.24
SSBP3-208ENST00000444533 TMTC2Q8N394 836 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 ERO1AQ96HE7 468 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 NEK1Q96PY6 1258 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 MTA3Q9BTC8 594 aa16.54■□□□□ 0.24
SSBP3-208ENST00000444533 GREB1LQ9C091 1923 aaPredicted RBP16.54■□□□□ 0.24
SSBP3-208ENST00000444533 BMP3P12645 472 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 HERVK_113P62684 666 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 TSGA10IPQ3SY00 556 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 TMEM67Q5HYA8 995 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 FAM83BQ5T0W9 1011 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 MB21D1Q8N884 522 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 CHURC1Q8WUH1 139 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 DCAF4Q8WV16 495 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 GMCL1Q96IK5 515 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 TMEM87BQ96K49 555 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 TMEM47Q9BQJ4 181 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 USP26Q9BXU7 913 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 CWC22Q9HCG8 908 aaKnown RBP16.53■□□□□ 0.24
SSBP3-208ENST00000444533 PRDM10Q9NQV6 1147 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 CPA4Q9UI42 421 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 FEM1BQ9UK73 627 aa16.53■□□□□ 0.24
SSBP3-208ENST00000444533 PCNTO95613 3336 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms