RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 MCM3P25205 808 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 KANK3Q6NY19 840 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 SCLT1Q96NL6 688 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 CNNM1Q9NRU3 951 aa13.12□□□□□ -0.31
SMPD4-209ENST00000439886 MAGEC2Q9UBF1 373 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-209ENST00000439886 A0A1B0GTH6 734 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 SYF2O95926 243 aaKnown RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 RFX5P48382 616 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 KRT31Q15323 416 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 RTN1Q16799 776 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 SWT1Q5T5J6 900 aaKnown RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 TBC1D10CQ8IV04 446 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 VPS54Q9P1Q0 977 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 XRN1Q8IZH2 1706 aaKnown RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 TRIM75PA6NK02 468 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 RNF225M0QZC1 329 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 HSF2BPO75031 334 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 PDE6BP35913 854 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 USP14P54578 494 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 ACTN3Q08043 901 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 ZC3H12AQ5D1E8 599 aaKnown RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 HELBQ8NG08 1087 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 COG1Q8WTW3 980 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 KAT2BQ92831 832 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 CEP89Q96ST8 783 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 AGXT2Q9BYV1 514 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 ABHD10Q9NUJ1 306 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 MYBL2P10244 700 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 MORC3Q14149 939 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 TTLL7Q6ZT98 887 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 RASGRP2Q7LDG7 609 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 MAATS1Q7Z4T9 603 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 SMCR8Q8TEV9 937 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 APPBP2Q92624 585 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 RRP36Q96EU6 259 aaKnown RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 CCDC97Q96F63 343 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 CWC25Q9NXE8 425 aaPredicted RBP13.11□□□□□ -0.31
SMPD4-209ENST00000439886 CEP131Q9UPN4 1083 aa13.11□□□□□ -0.31
SMPD4-209ENST00000439886 NDUFA10O95299 355 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 ZNF18P17022 549 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 PAX7P23759 505 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 USP5P45974 858 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 GUCY2FP51841 1108 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 EZH2Q15910 746 aaKnown RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 ODF2Q5BJF6 829 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 SYMPKQ92797 1274 aaKnown RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 PEAK1Q9H792 1746 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 KRT86O43790 486 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 RANBP6O60518 1105 aaKnown RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 CABP4P57796 275 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 CKAP4Q07065 602 aaKnown RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 PDIA6Q15084 440 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 KCTD19Q17RG1 926 aaPredicted RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 TRIM47Q96LD4 638 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 MED15Q96RN5 788 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 MAP3K14Q99558 947 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 BIN2Q9UBW5 565 aaPredicted RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 ADD3Q9UEY8 706 aaKnown RBP13.1□□□□□ -0.31
SMPD4-209ENST00000439886 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
SMPD4-209ENST00000439886 UBN2Q6ZU65 1347 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 KCNJ18B7U540 433 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 MYO1BO43795 1136 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 POLD1P28340 1107 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 COPB1P53618 953 aaKnown RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 KCNJ12Q14500 433 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 SUGP1Q8IWZ8 645 aaKnown RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 NKX2-3Q8TAU0 364 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 NELFBQ8WX92 580 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 WASF1Q92558 559 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 CD248Q9HCU0 757 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 BSDC1Q9NW68 430 aaPredicted RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 DUSP10Q9Y6W6 482 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 TUBBP07437 444 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 TUBB2AQ13885 445 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 TTF1Q15361 905 aaPredicted RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 SPA17Q15506 151 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 RILPL1Q5EBL4 403 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 TUBB2BQ9BVA1 445 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 PPANQ9NQ55 473 aaKnown RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 EHD2Q9NZN4 543 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 CDHR2Q9BYE9 1310 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 WTAPQ15007 396 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 E2F5Q15329 346 aa13.09□□□□□ -0.31
SMPD4-209ENST00000439886 THOC1Q96FV9 657 aaKnown RBP13.09□□□□□ -0.31
SMPD4-209ENST00000439886 TRIM49BA6NDI0 452 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 KCNA6P17658 529 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 PTPREP23469 700 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 GPTP24298 496 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 TUBB4BP68371 445 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 KIF5AQ12840 1032 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 IFT88Q13099 833 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 PPFIA1Q13136 1202 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 ATG9AQ7Z3C6 839 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 FAM89AQ96GI7 184 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 TUBGCP6Q96RT7 1819 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 FAM170AA1A519 330 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 BACH1O14867 736 aa13.08□□□□□ -0.32
SMPD4-209ENST00000439886 ERCC5P28715 1186 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms