RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZKSCAN1P17029 563 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-208ENST00000437607 ZYXQ15942 572 aaKnown RBP14.53□□□□□ -0.08
PTPRF-208ENST00000437607 C8orf34Q49A92 452 aa14.53□□□□□ -0.08
PTPRF-208ENST00000437607 EYSQ5T1H1 3165 aa14.53□□□□□ -0.08
PTPRF-208ENST00000437607 CUL9Q8IWT3 2517 aa14.53□□□□□ -0.08
PTPRF-208ENST00000437607 EIF5BO60841 1220 aaKnown RBP14.52□□□□□ -0.09
PTPRF-208ENST00000437607 RGS2P41220 211 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 MAGEA10P43363 369 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-208ENST00000437607 PLEKHH3Q7Z736 793 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 TRMT44Q8IYL2 757 aaKnown RBP14.52□□□□□ -0.09
PTPRF-208ENST00000437607 MAGEB6Q8N7X4 407 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 KBTBD3Q8NAB2 608 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 ACER1Q8TDN7 264 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 GTF3C2Q8WUA4 911 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-208ENST00000437607 EDC3Q96F86 508 aaKnown RBP14.52□□□□□ -0.09
PTPRF-208ENST00000437607 EHD4Q9H223 541 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 FLRT1Q9NZU1 646 aa14.52□□□□□ -0.09
PTPRF-208ENST00000437607 GUCY1A2P33402 732 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 SHMT1P34896 483 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 USP5P45974 858 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 PLCD1P51178 756 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 EVX2Q03828 476 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 CATSPERGQ6ZRH7 1159 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 APBA2Q99767 749 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 RIOK1Q9BRS2 568 aaKnown RBP14.51□□□□□ -0.09
PTPRF-208ENST00000437607 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.51□□□□□ -0.09
PTPRF-208ENST00000437607 SERPINB13Q9UIV8 391 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 RABGAP1Q9Y3P9 1069 aa14.51□□□□□ -0.09
PTPRF-208ENST00000437607 RAD50Q92878 1312 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L15C9J2P7 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L13C9JLJ4 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L11C9JVI0 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L18D6R9N7 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L22D6RA61 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L17D6RBQ6 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L19D6RCP7 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L20D6RJB6 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 VCAM1P19320 739 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 USP17L24Q0WX57 530 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 MAP2K5Q13163 448 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 RAB3GAP1Q15042 981 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 LRRC26Q2I0M4 334 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 CERKLQ49MI3 558 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-208ENST00000437607 RUFY2Q8WXA3 655 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 KIAA1683Q9H0B3 1180 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 BTBD7Q9P203 1132 aa14.5□□□□□ -0.09
PTPRF-208ENST00000437607 ABCB5Q2M3G0 1257 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 LRIT3Q3SXY7 679 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 ZSCAN25Q6NSZ9 544 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 LBX2Q6XYB7 198 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 Q7L0L9 218 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 TICAM2Q86XR7 235 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 CERS3Q8IU89 383 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 FEZ1Q99689 392 aa14.49□□□□□ -0.09
PTPRF-208ENST00000437607 UPF2Q9HAU5 1272 aaKnown RBP14.49□□□□□ -0.09
PTPRF-208ENST00000437607 GREB1LQ9C091 1923 aaPredicted RBP14.49□□□□□ -0.09
PTPRF-208ENST00000437607 SPDYE16A6NNV3 312 aaPredicted RBP14.48□□□□□ -0.09
PTPRF-208ENST00000437607 IGHA2P01877 340 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 ZFYP08048 801 aaPredicted RBP14.48□□□□□ -0.09
PTPRF-208ENST00000437607 PTPREP23469 700 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 CHMLP26374 656 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 USP14P54578 494 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 GABPAQ06546 454 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 MAP3K12Q12852 859 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 GPR153Q6NV75 609 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 TTC6Q86TZ1 520 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 CCAR1Q8IX12 1150 aaKnown RBP14.48□□□□□ -0.09
PTPRF-208ENST00000437607 TDHQ8IZJ6 230 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 SLC17A8Q8NDX2 589 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 NPLOC4Q8TAT6 608 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 BACH2Q9BYV9 841 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 MYH4Q9Y623 1939 aa14.48□□□□□ -0.09
PTPRF-208ENST00000437607 PRUNE2Q8WUY3 3088 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 A0A1W2PRG0 241 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 SLC15A5A6NIM6 579 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 MFAP1P55081 439 aaKnown RBP14.47□□□□□ -0.09
PTPRF-208ENST00000437607 GRB14Q14449 540 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 SEPT2Q15019 361 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 TRPV1Q8NER1 839 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 RPAP3Q9H6T3 665 aaPredicted RBP14.47□□□□□ -0.09
PTPRF-208ENST00000437607 MCM3APO60318 1980 aa14.47□□□□□ -0.09
PTPRF-208ENST00000437607 REC8O95072 547 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 HOXC6P09630 235 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 CCNA1P78396 465 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 NMIQ13287 307 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-208ENST00000437607 KIAA1755Q5JYT7 1200 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 TMED8Q6PL24 325 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-208ENST00000437607 CWC27Q6UX04 472 aaKnown RBP14.46□□□□□ -0.09
PTPRF-208ENST00000437607 DEFB123Q8N688 67 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 ESYT1Q9BSJ8 1104 aa14.46□□□□□ -0.09
PTPRF-208ENST00000437607 UBE2OQ9C0C9 1292 aaKnown RBP14.46□□□□□ -0.09
PTPRF-208ENST00000437607 CDH23Q9H251 3354 aa14.46□□□□□ -0.1
PTPRF-208ENST00000437607 A0A0D9SFI3 127 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 MAGEB6P1A0A0J9YX57 407 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 TCRBV5S4A2TA0A5A2 114 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 DLL1O00548 723 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 RNF113AO15541 343 aaKnown RBP14.45□□□□□ -0.1
PTPRF-208ENST00000437607 PDE6AP16499 860 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 WDR78Q5VTH9 848 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 CWC22Q9HCG8 908 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms