RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 SLAIN1Q8ND83 568 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 CNNM3Q8NE01 707 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 NGDNQ8NEJ9 315 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 C8orf76Q96K31 380 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 VCPKMTQ9H867 229 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ACTR5Q9H9F9 607 aaPredicted RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 CLK4Q9HAZ1 481 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 MYO1AQ9UBC5 1043 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 TIMM22Q9Y584 194 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 C2orf72A6NCS6 295 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 RAPGEF3O95398 923 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 LDHAP00338 332 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 TUBBP07437 444 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ATP4AP20648 1035 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 PEX5P50542 639 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 IKQ13123 557 aaPredicted RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 SAFBQ15424 915 aaKnown RBP eCLIP7.26□□□□□ -1.25
MCF2-205ENST00000437564 LONRF1Q17RB8 773 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 CCDC183Q5T5S1 534 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 IER5LQ5T953 404 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ZSCAN25Q6NSZ9 544 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ZCCHC8Q6NZY4 707 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 PI16Q6UXB8 463 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 GSDMBQ8TAX9 411 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 DEPTORQ8TB45 409 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 TBC1D31Q96DN5 1066 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 RPS6KC1Q96S38 1066 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 CCT7Q99832 543 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ZFATQ9P243 1243 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 STIM2Q9P246 746 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 SERPINA10Q9UK55 444 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 SATB2Q9UPW6 733 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 THOC2Q8NI27 1593 aaKnown RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 HTR3EA5X5Y0 456 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 TTLL13PA6NNM8 815 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 H3BQF6 201 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 PER1O15534 1290 aaPredicted RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 MEFVO15553 781 aaPredicted RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 NDUFB5O43674 189 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 ACTN4O43707 911 aaKnown RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 LINGO3P0C6S8 592 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 PTGS1P23219 599 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 CDC25BP30305 580 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 TNNI2P48788 182 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 ATP2B2Q01814 1243 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 ACTN3Q08043 901 aaPredicted RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 BYSLQ13895 437 aaKnown RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 SKIV2LQ15477 1246 aaKnown RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 KANK3Q6NY19 840 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 NLRP9Q7RTR0 991 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 RPGRIP1Q96KN7 1286 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 UROC1Q96N76 676 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 RTFDC1Q9BY42 306 aaPredicted RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 XPO4Q9C0E2 1151 aaKnown RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 ZHX3Q9H4I2 956 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 DMAP1Q9NPF5 467 aaPredicted RBP7.25□□□□□ -1.25
MCF2-205ENST00000437564 ASAP1Q9ULH1 1129 aa7.25□□□□□ -1.25
MCF2-205ENST00000437564 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.25□□□□□ -1.25
MCF2-205ENST00000437564 LRRD1A4D1F6 860 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 MYO1FO00160 1098 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 STXBP3O00186 592 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TSPAN1O60635 241 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 KCNJ6P48051 423 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 IGBP1P78318 339 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 STIM1Q13586 685 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 NEPROQ6NW34 567 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TTC41PQ6P2S7 1318 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 LSMEM2Q8N112 164 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 PDCD7Q8N8D1 485 aaKnown RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 SVIPQ8NHG7 77 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 RASSF8Q8NHQ8 419 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ABHD8Q96I13 439 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 FKBP14Q9NWM8 211 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 CFDP1Q9UEE9 299 aaPredicted RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 SLC45A1Q9Y2W3 748 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 PCDHB2Q9Y5E7 798 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ANKRD30AQ9BXX3 1397 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 GPR75-ASB3A0A0A6YYF3 556 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 SNPHO15079 494 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 PFDN1O60925 122 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TADA3O75528 432 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 CYP1A2P05177 515 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 POLR2EP19388 210 aaKnown RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 SULT2A1Q06520 285 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ITGA7Q13683 1181 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 LBRQ14739 615 aaKnown RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 COG2Q14746 738 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 BCL2A1Q16548 175 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TMEM53Q6P2H8 277 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ITPRIPQ8IWB1 547 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TMCO5AQ8N6Q1 288 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 LINC00469Q8N7U9 141 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 TNIP2Q8NFZ5 429 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 AFAP1L1Q8TED9 768 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 LEO1Q8WVC0 666 aaPredicted RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 RABGGTAQ92696 567 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ZNF512BQ96KM6 892 aaPredicted RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 VPS33BQ9H267 617 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 PREBQ9HCU5 417 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms