RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NT5C2P49902 561 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 RSRC2Q7L4I2 434 aaKnown RBP12.82□□□□□ -0.36
USP4-205ENST00000431357 CTCFLQ8NI51 663 aaPredicted RBP12.82□□□□□ -0.36
USP4-205ENST00000431357 ZNF335Q9H4Z2 1342 aaPredicted RBP12.81□□□□□ -0.36
USP4-205ENST00000431357 PLEKHA8P1O95397 391 aa12.81□□□□□ -0.36
USP4-205ENST00000431357 CD44P16070 742 aaKnown RBP12.81□□□□□ -0.36
USP4-205ENST00000431357 SF3B3Q15393 1217 aaKnown RBP12.81□□□□□ -0.36
USP4-205ENST00000431357 EARS2Q5JPH6 523 aaKnown RBP12.81□□□□□ -0.36
USP4-205ENST00000431357 GOLGA1Q92805 767 aa12.81□□□□□ -0.36
USP4-205ENST00000431357 BSDC1Q9NW68 430 aaPredicted RBP12.81□□□□□ -0.36
USP4-205ENST00000431357 ADGRG1Q9Y653 693 aa12.81□□□□□ -0.36
USP4-205ENST00000431357 DLEC1Q9Y238 1755 aa12.81□□□□□ -0.36
USP4-205ENST00000431357 DOT1LQ8TEK3 1739 aa12.81□□□□□ -0.36
USP4-205ENST00000431357 CICQ96RK0 1608 aaPredicted RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 CCDC66A2RUB6 948 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 FAM205CA6NFA0 338 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 TEX33O43247 280 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 KIF5CO60282 957 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 MFAP3LO75121 409 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 FECHP22830 423 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 PLA2G4AP47712 749 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 RBL2Q08999 1139 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 TRIM14Q14142 442 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 ZNF174Q15697 407 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 CLEC4GQ6UXB4 293 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 ANKRD20A12PQ8NF67 263 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 RMND1Q9NWS8 449 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 LIMA1Q9UHB6 759 aaKnown RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP4-205ENST00000431357 PDS5AQ29RF7 1337 aaKnown RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 CNTNAP5Q8WYK1 1306 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 LOC102724428A0A0B4J2F2 783 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 LRRC10BA6NIK2 292 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 GTPBP6O43824 516 aaPredicted RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 PRDM1O75626 825 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 GYG1P46976 350 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 SIK1P57059 783 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 PTGDRQ13258 359 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 KLHL10Q6JEL2 608 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 CTR9Q6PD62 1173 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 RASGRP2Q7LDG7 609 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 CCDC12Q8WUD4 166 aaPredicted RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 SECISBP2LQ93073 1101 aaKnown RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 RWDD2AQ9UIY3 292 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 TTF2Q9UNY4 1162 aaKnown RBP12.8□□□□□ -0.36
USP4-205ENST00000431357 WNK3Q9BYP7 1800 aa12.8□□□□□ -0.36
USP4-205ENST00000431357 POTEB2H3BUK9 544 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 MMP14P50281 582 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 STX17P56962 302 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 DYNLL1P63167 89 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 NPY5RQ15761 445 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 E2F4Q16254 413 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 TEX35Q5T0J7 233 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 ARL6IP4Q66PJ3 421 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 TMTC1Q8IUR5 882 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 CEP112Q8N8E3 955 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 DESI2Q9BSY9 194 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 TSPYL1Q9H0U9 437 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 MRPL44Q9H9J2 332 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 IQSEC3Q9UPP2 1182 aaPredicted RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 CACNA1SQ13698 1873 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 SOWAHDA6NJG2 315 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 SCG2P13521 617 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 CALML3P27482 149 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 NLRP5P59047 1200 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 KARSQ15046 597 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 CC2D1AQ6P1N0 951 aaPredicted RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 RAD9BQ6WBX8 426 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 CRNKL1Q9BZJ0 848 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 ARFGAP3Q9NP61 516 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 ATP8A2Q9NTI2 1148 aa12.79□□□□□ -0.36
USP4-205ENST00000431357 THRAP3Q9Y2W1 955 aaKnown RBP12.79□□□□□ -0.36
USP4-205ENST00000431357 STRCQ7RTU9 1775 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 USP17L12C9JPN9 530 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 USP17L21D6R901 530 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 RGL2O15211 777 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 LONP1P36776 959 aaKnown RBP12.78□□□□□ -0.36
USP4-205ENST00000431357 TXLNAP40222 546 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 SEMA3FQ13275 785 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 BRD3Q15059 726 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 PFKFB3Q16875 520 aaPredicted RBP12.78□□□□□ -0.36
USP4-205ENST00000431357 SBK1Q52WX2 424 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 SRGAP1Q7Z6B7 1085 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 FAM84BQ96KN1 310 aaPredicted RBP12.78□□□□□ -0.36
USP4-205ENST00000431357 COL1A1P02452 1464 aaPredicted RBP12.78□□□□□ -0.36
USP4-205ENST00000431357 KAT6BQ8WYB5 2073 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 XDHP47989 1333 aa12.78□□□□□ -0.36
USP4-205ENST00000431357 CLGNO14967 610 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 KIF5BP33176 963 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 PAK1Q13153 545 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 ITPK1Q13572 414 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 MTF1Q14872 753 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 DDB1Q16531 1140 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 ZNF658Q5TYW1 1059 aaPredicted RBP12.77□□□□□ -0.36
USP4-205ENST00000431357 RRAGBQ5VZM2 374 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 PDXDC2PQ6P474 469 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 FBXO33Q7Z6M2 555 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 PLCD3Q8N3E9 789 aa12.77□□□□□ -0.36
USP4-205ENST00000431357 SRBD1Q8N5C6 995 aaKnown RBP12.77□□□□□ -0.36
USP4-205ENST00000431357 SMARCC1Q92922 1105 aaPredicted RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms