RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RPUSD2Q8IZ73 545 aaKnown RBP5.62□□□□□ -1.51
HMGB3-203ENST00000430118 ZBTB38Q8NAP3 1195 aaPredicted RBP5.62□□□□□ -1.51
HMGB3-203ENST00000430118 KCT2Q8NC54 265 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 NUDT8Q8WV74 236 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 ERBB4Q15303 1308 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 SYNMO15061 1565 aa5.62□□□□□ -1.51
HMGB3-203ENST00000430118 RNF17Q9BXT8 1623 aaKnown RBP5.62□□□□□ -1.51
HMGB3-203ENST00000430118 LOC100289279A0A1B0GTE1 492 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 ADCY3O60266 1144 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 MARCH6O60337 910 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 POLR1AO95602 1720 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-203ENST00000430118 ALBP02768 609 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 PGRP06401 933 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 RAG1P15918 1043 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 LORP23490 312 aaPredicted RBP5.61□□□□□ -1.51
HMGB3-203ENST00000430118 AMPD3Q01432 767 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 TKFCQ3LXA3 575 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 DALRD3Q5D0E6 543 aaKnown RBP5.61□□□□□ -1.51
HMGB3-203ENST00000430118 MRPL41Q8IXM3 137 aaKnown RBP5.61□□□□□ -1.51
HMGB3-203ENST00000430118 KLHL6Q8WZ60 621 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 NINJ1Q92982 152 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 SLC9A7Q96T83 725 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 LTBP3Q9NS15 1303 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 PFDN2Q9UHV9 154 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 CORINQ9Y5Q5 1042 aa5.61□□□□□ -1.51
HMGB3-203ENST00000430118 SHANK2Q9UPX8 1470 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 RGS13O14921 159 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 DNAJA2O60884 412 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 AOC2O75106 756 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ASMTLO95671 621 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 GRK4P32298 578 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 PMS1P54277 932 aaKnown RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ETF1P62495 437 aaKnown RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 SETDB1Q15047 1291 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ZYXQ15942 572 aaKnown RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 TM4SF20Q53R12 229 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ZBTB37Q5TC79 503 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ACSF2Q96CM8 615 aaPredicted RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 MFSD3Q96ES6 412 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 KLHDC7BQ96G42 594 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 WDR18Q9BV38 432 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ZC3H12CQ9C0D7 883 aaKnown RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 IRF2BPLQ9H1B7 796 aa5.6□□□□□ -1.51
HMGB3-203ENST00000430118 DDX56Q9NY93 547 aaKnown RBP5.6□□□□□ -1.51
HMGB3-203ENST00000430118 ABCC1P33527 1531 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 CDK13Q14004 1512 aaKnown RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 A2ML1A8K2U0 1454 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ZMYM3Q14202 1370 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 PRAMEF27A3QJZ7 478 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ANKRD34BA5PLL1 514 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 MEGF11A6BM72 1044 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 M0R082 166 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ECEL1O95672 775 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 LIG1P18858 919 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ID3Q02535 119 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 PLEKHG6Q3KR16 790 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 FNDC3BQ53EP0 1204 aaKnown RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 EXOSC6Q5RKV6 272 aaKnown RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 KIAA1211LQ6NV74 962 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 HID1Q8IV36 788 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 RNF214Q8ND24 703 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ZNF417Q8TAU3 575 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ZNF507Q8TCN5 953 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 ZNF587Q96SQ5 575 aaPredicted RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 USP26Q9BXU7 913 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 CWC22Q9HCG8 908 aaKnown RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 SUCOQ9UBS9 1254 aaKnown RBP5.59□□□□□ -1.51
HMGB3-203ENST00000430118 HIF3AQ9Y2N7 669 aa5.59□□□□□ -1.51
HMGB3-203ENST00000430118 FMN1Q68DA7 1419 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 DCDC2CA8MYV0 355 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 PLD2O14939 933 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 CTSBP07858 339 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 FAM153BP0C7A2 387 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 PMLP29590 882 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 CD68P34810 354 aaPredicted RBP5.58□□□□□ -1.52
HMGB3-203ENST00000430118 STAT3P40763 770 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 GNPTABQ3T906 1256 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 TXNDC11Q6PKC3 985 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 NIM1KQ8IY84 436 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 FAM13CQ8NE31 585 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 TMEM87BQ96K49 555 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 CCDC74BQ96LY2 380 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 KIF2CQ99661 725 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 MRPL4Q9BYD3 311 aaKnown RBP5.58□□□□□ -1.52
HMGB3-203ENST00000430118 ATXN3LQ9H3M9 355 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 INTS7Q9NVH2 962 aaKnown RBP5.58□□□□□ -1.52
HMGB3-203ENST00000430118 CRIM1Q9NZV1 1036 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 KLHL3Q9UH77 587 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 ITSN2Q9NZM3 1697 aa5.58□□□□□ -1.52
HMGB3-203ENST00000430118 CLTCQ00610 1675 aaKnown RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 PREX2Q70Z35 1606 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 DNAJC25-GNG10A0A024R161 153 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CHURC1-FNTBB4DL54 471 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 PDGFRBP09619 1106 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 HCLS1P14317 486 aaPredicted RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CDC25BP30305 580 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 SOX5P35711 763 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 HSP90AA2PQ14568 343 aaPredicted RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CHSY3Q70JA7 882 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms