RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CCDC39Q9UFE4 941 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 ST14Q9Y5Y6 855 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 CLEC3AO75596 197 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 SSBP05455 408 aaKnown RBP eCLIP9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 DNAJA1P31689 397 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 TNK2Q07912 1038 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 NBPF12Q5TAG4 269 aaPredicted RBP9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 UNC5AQ6ZN44 842 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 HRASLS5Q96KN8 279 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 SLC6A18Q96N87 628 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 KCNH3Q9ULD8 1083 aa9.07□□□□□ -0.96
CCDC88A-206ENST00000430086 CASP7P55210 303 aa9.06□□□□□ -0.96
CCDC88A-206ENST00000430086 DTWD2Q8NBA8 298 aa9.06□□□□□ -0.96
CCDC88A-206ENST00000430086 BCL7CQ8WUZ0 217 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-206ENST00000430086 SUCOQ9UBS9 1254 aaKnown RBP9.06□□□□□ -0.96
CCDC88A-206ENST00000430086 SLC12A7Q9Y666 1083 aa9.06□□□□□ -0.96
CCDC88A-206ENST00000430086 RBAK-RBAKDNI3L0D1 243 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 ZYXQ15942 572 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 AOC3Q16853 763 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 THAP5Q7Z6K1 395 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 TTC6Q86TZ1 520 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 FAM169BQ8N8A8 192 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 ANAPC16Q96DE5 110 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 HSPA12BQ96MM6 686 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 SEMA3GQ9NS98 782 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 SLC5A6Q9Y289 635 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 PITPNM2Q9BZ72 1349 aa9.05□□□□□ -0.96
CCDC88A-206ENST00000430086 A0A1W2PQH9 124 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 LRRN2O75325 713 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 WNT11O96014 354 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 SRFP11831 508 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 PMS1P54277 932 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 CDKAL1Q5VV42 579 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 NFXL1Q6ZNB6 911 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 ASB11Q8WXH4 323 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 GPR62Q9BZJ7 368 aa9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 ANGEL1Q9UNK9 670 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-206ENST00000430086 ADAMTS4O75173 837 aa9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 NBPF9Q3BBW0 867 aa9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 WFDC3Q8IUB2 231 aa9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 Q8N3U1 123 aa9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 DUSP15Q9H1R2 295 aaPredicted RBP9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 LTBP3Q9NS15 1303 aa9.03□□□□□ -0.96
CCDC88A-206ENST00000430086 FAM86C2PA6NEL3 165 aa9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 BNIP3Q12983 259 aa9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 TNNI3KQ59H18 835 aa9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 SMARCC1Q92922 1105 aaPredicted RBP9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 TRIT1Q9H3H1 467 aaKnown RBP9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 PHAXQ9H814 394 aaKnown RBP9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 PRKAG3Q9UGI9 489 aa9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 ZNF214Q9UL59 606 aaPredicted RBP9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 MRVI1Q9Y6F6 885 aa9.02□□□□□ -0.97
CCDC88A-206ENST00000430086 H3BS24 57 aa9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 ETFBP38117 255 aa9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 BBS9Q3SYG4 887 aa9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 SPRED2Q7Z698 418 aa9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 ZNF512BQ96KM6 892 aaPredicted RBP9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 ZNF408Q9H9D4 720 aa9.01□□□□□ -0.97
CCDC88A-206ENST00000430086 PPP2R5EQ16537 467 aa9□□□□□ -0.97
CCDC88A-206ENST00000430086 FLCNQ8NFG4 579 aa9□□□□□ -0.97
CCDC88A-206ENST00000430086 ENOX1Q8TC92 643 aaKnown RBP9□□□□□ -0.97
CCDC88A-206ENST00000430086 MKRN2Q9H000 416 aaKnown RBP9□□□□□ -0.97
CCDC88A-206ENST00000430086 PAK6Q9NQU5 681 aaPredicted RBP9□□□□□ -0.97
CCDC88A-206ENST00000430086 GPATCH2Q9NW75 528 aa9□□□□□ -0.97
CCDC88A-206ENST00000430086 C9IYK1 514 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 SMAD7O15105 426 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 CD8BP10966 210 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 ANKRD39Q53RE8 183 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 PPFIBP1Q86W92 1011 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 UBE2FQ969M7 185 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 ATP13A1Q9HD20 1204 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 ZSWIM5Q9P217 1185 aa8.99□□□□□ -0.97
CCDC88A-206ENST00000430086 AUHQ13825 339 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 GAB4Q2WGN9 574 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 ZNF574Q6ZN55 896 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 TMPRSS7Q7RTY8 843 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 TSPYL5Q86VY4 417 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 AGBL5Q8NDL9 886 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 TANGO6Q9C0B7 1094 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 ASCC2Q9H1I8 757 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 PRR13Q9NZ81 148 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 LMCD1Q9NZU5 365 aa8.98□□□□□ -0.97
CCDC88A-206ENST00000430086 CD96P40200 585 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 NMIQ13287 307 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 ANGEL2Q5VTE6 544 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 CCDC144CPQ8IYA2 1237 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 C7orf61Q8IZ16 206 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 PRDM14Q9GZV8 571 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 ACTR10Q9NZ32 417 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 PCDHB12Q9Y5F1 795 aa8.97□□□□□ -0.97
CCDC88A-206ENST00000430086 SHISA3A0PJX4 238 aa8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 ATP2B1P20020 1258 aa8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 FUT4P22083 530 aa8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 TPP2P29144 1249 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 GP2P55259 537 aaKnown RBP8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 IKZF1Q13422 519 aa8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 SNW1Q13573 536 aaKnown RBP8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 GNPTABQ3T906 1256 aa8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 AXDND1Q5T1B0 1012 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-206ENST00000430086 TDRD10Q5VZ19 366 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms