RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 G3BP1Q13283 466 aaKnown RBP eCLIP10.46□□□□□ -0.73
HDAC1-202ENST00000428704 CCDC85BQ15834 202 aaPredicted RBP10.46□□□□□ -0.73
HDAC1-202ENST00000428704 AKNAD1Q5T1N1 836 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 TREML2Q5T2D2 321 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 HHIPL2Q6UWX4 724 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 PI16Q6UXB8 463 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 ZNF384Q8TF68 577 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 TIFAQ96CG3 184 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 OSBPL3Q9H4L5 887 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 GNL3LQ9NVN8 582 aaKnown RBP10.46□□□□□ -0.73
HDAC1-202ENST00000428704 DAGLAQ9Y4D2 1042 aa10.46□□□□□ -0.73
HDAC1-202ENST00000428704 FOCADQ5VW36 1801 aa10.46□□□□□ -0.74
HDAC1-202ENST00000428704 DNAH12Q6ZR08 3092 aa10.46□□□□□ -0.74
HDAC1-202ENST00000428704 SURF6O75683 361 aaKnown RBP10.45□□□□□ -0.74
HDAC1-202ENST00000428704 RBM25P49756 843 aaKnown RBP10.45□□□□□ -0.74
HDAC1-202ENST00000428704 FOSBP53539 338 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 TNNI3KQ59H18 835 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 PLEKHM2Q8IWE5 1019 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 NEUROD6Q96NK8 337 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 P2RX7Q99572 595 aaKnown RBP10.45□□□□□ -0.74
HDAC1-202ENST00000428704 EPHX3Q9H6B9 360 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 GPR108Q9NPR9 543 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 HMG20BQ9P0W2 317 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 FPGT-TNNI3KV9GXZ4 949 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 NCOR1O75376 2440 aa10.45□□□□□ -0.74
HDAC1-202ENST00000428704 GAKO14976 1311 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 PHF20L1A8MW92 1017 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 LDHBP07195 334 aaKnown RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 MCAMP43121 646 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 MRE11P49959 708 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 PABPC4Q13310 644 aaKnown RBP eCLIP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 BECN1Q14457 450 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 VARS2Q5ST30 1063 aaKnown RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 DDX12PQ92771 950 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 DBNDD2Q9BQY9 259 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 PRDM12Q9H4Q4 367 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 TLR7Q9NYK1 1049 aaKnown RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 DAXXQ9UER7 740 aaPredicted RBP10.44□□□□□ -0.74
HDAC1-202ENST00000428704 EXOC6BQ9Y2D4 811 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 AK9Q5TCS8 1911 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 SIPA1L1O43166 1804 aa10.44□□□□□ -0.74
HDAC1-202ENST00000428704 DNM1LO00429 736 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 IGFBP4P22692 258 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 NFIAQ12857 509 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 NBR1Q14596 966 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 CCL14Q16627 93 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 CDC42EP5Q6NZY7 148 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 CCDC84Q86UT8 332 aaPredicted RBP10.43□□□□□ -0.74
HDAC1-202ENST00000428704 ZNF454Q8N9F8 522 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 SPATA5Q8NB90 893 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 PROCA1Q8NCQ7 364 aaPredicted RBP10.43□□□□□ -0.74
HDAC1-202ENST00000428704 HS3ST6Q96QI5 342 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 C22orf23Q9BZE7 217 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 PDLIM7Q9NR12 457 aa10.43□□□□□ -0.74
HDAC1-202ENST00000428704 DBNLQ9UJU6 430 aaKnown RBP10.43□□□□□ -0.74
HDAC1-202ENST00000428704 ATRNL1Q5VV63 1379 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 CACNA1AO00555 2505 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 MUC6Q6W4X9 2439 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 MSCO60682 206 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 BMP1P13497 986 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 CNGA1P29973 690 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 RGS2P41220 211 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 MECOMQ03112 1051 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 OS9Q13438 667 aaPredicted RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 TRIM60Q495X7 471 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 PPP4R3BQ5MIZ7 849 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 TTC22Q5TAA0 569 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 POTEGQ6S5H5 508 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 SLC39A5Q6ZMH5 540 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 TBC1D9Q6ZT07 1266 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 ZSCAN29Q8IWY8 852 aaPredicted RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 CCAR1Q8IX12 1150 aaKnown RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 ZGPATQ8N5A5 531 aaKnown RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 LPAR1Q92633 364 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 EAF2Q96CJ1 260 aaPredicted RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 ASCC2Q9H1I8 757 aaPredicted RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 CXXC1Q9P0U4 656 aaPredicted RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 MORF4L1Q9UBU8 362 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 FAM198AQ9UFP1 575 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 ABCF2Q9UG63 623 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 DDX20Q9UHI6 824 aaKnown RBP10.42□□□□□ -0.74
HDAC1-202ENST00000428704 PCDHGA10Q9Y5H3 936 aa10.42□□□□□ -0.74
HDAC1-202ENST00000428704 MROH7-TTC4A0A0A0MT08 1334 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 DOCK1Q14185 1865 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 POTEB3A0JP26 581 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 TRIM43BA6NCK2 446 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 FAM86C2PA6NEL3 165 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 GRXCR2A6NFK2 248 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 POTEMA6NI47 508 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 CTNND1O60716 968 aaKnown RBP10.41□□□□□ -0.74
HDAC1-202ENST00000428704 RAB11FIP3O75154 756 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 UQCRFS1P1P0C7P4 283 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 MLLT3P42568 568 aaPredicted RBP10.41□□□□□ -0.74
HDAC1-202ENST00000428704 AAK1Q2M2I8 961 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 GORABQ5T7V8 394 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 MFSD14CQ5VZR4 134 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 POTEBQ6S5H4 581 aa10.41□□□□□ -0.74
HDAC1-202ENST00000428704 SH3RF1Q7Z6J0 888 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms