RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 ASPNQ9BXN1 380 aa6.43□□□□□ -1.38
USP40-204ENST00000427947 PHAXQ9H814 394 aaKnown RBP6.43□□□□□ -1.38
USP40-204ENST00000427947 ZNF214Q9UL59 606 aaPredicted RBP6.43□□□□□ -1.38
USP40-204ENST00000427947 FAM155AB1AL88 458 aaPredicted RBP6.42□□□□□ -1.38
USP40-204ENST00000427947 C9IYK1 514 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 KLF4O43474 513 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 LRRN2O75325 713 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 CEACAM5P06731 702 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 ZNF865P0CJ78 1059 aaPredicted RBP6.42□□□□□ -1.38
USP40-204ENST00000427947 HOXA10P31260 410 aaPredicted RBP6.42□□□□□ -1.38
USP40-204ENST00000427947 KIR3DL1P43629 444 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 GNPTABQ3T906 1256 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 NBPF12Q5TAG4 269 aaPredicted RBP6.42□□□□□ -1.38
USP40-204ENST00000427947 VHLLQ6RSH7 139 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 C22orf34Q6ZV56 151 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 PPFIBP1Q86W92 1011 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 PMFBP1Q8TBY8 1022 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 VWCEQ96DN2 955 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 FBXL18Q96ME1 805 aa6.42□□□□□ -1.38
USP40-204ENST00000427947 ZC3H7BQ9UGR2 993 aaKnown RBP6.42□□□□□ -1.38
USP40-204ENST00000427947 ADAM23O75077 832 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 TP53P04637 393 aaPredicted RBP6.41□□□□□ -1.38
USP40-204ENST00000427947 GRIK1P39086 918 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 TNK2Q07912 1038 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 RBL2Q08999 1139 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 RAB33AQ14088 237 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 FXNQ16595 210 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 BBS9Q3SYG4 887 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 C6orf15Q6UXA7 325 aaPredicted RBP6.41□□□□□ -1.38
USP40-204ENST00000427947 CCDC144CPQ8IYA2 1237 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 PLD6Q8N2A8 252 aaKnown RBP6.41□□□□□ -1.38
USP40-204ENST00000427947 CELF2-AS1Q8N7Q2 184 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 DTWD2Q8NBA8 298 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 Q96M66 194 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 MKNK2Q9HBH9 465 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 ST7Q9NRC1 585 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 KCNH3Q9ULD8 1083 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 CAPN6Q9Y6Q1 641 aa6.41□□□□□ -1.38
USP40-204ENST00000427947 B2RBV5 119 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 U2SURPO15042 1029 aaKnown RBP6.4□□□□□ -1.38
USP40-204ENST00000427947 DDAH1O94760 285 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 SLC7A5Q01650 507 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 NKPD1Q17RQ9 610 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 CDKAL1Q5VV42 579 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 DCAF15Q66K64 600 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 SPACA3Q8IXA5 215 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 NETO1Q8TDF5 533 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 MICAL1Q8TDZ2 1067 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 SMARCC1Q92922 1105 aaPredicted RBP6.4□□□□□ -1.38
USP40-204ENST00000427947 RNF112Q9ULX5 631 aa6.4□□□□□ -1.38
USP40-204ENST00000427947 IFI16Q16666 785 aaKnown RBP6.39□□□□□ -1.39
USP40-204ENST00000427947 DDR2Q16832 855 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 AXDND1Q5T1B0 1012 aaPredicted RBP6.39□□□□□ -1.39
USP40-204ENST00000427947 NBPF6Q5VWK0 638 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 KIAA1211LQ6NV74 962 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 FAM178BQ8IXR5 827 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 KLHL6Q8WZ60 621 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 NBPF4Q96M43 638 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 FBXL21Q9UKT6 434 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 PLAGL2Q9UPG8 496 aa6.39□□□□□ -1.39
USP40-204ENST00000427947 H3BS24 57 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 COBLO75128 1261 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 GJB6O95452 261 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 SNW1Q13573 536 aaKnown RBP6.38□□□□□ -1.39
USP40-204ENST00000427947 AUHQ13825 339 aaKnown RBP6.38□□□□□ -1.39
USP40-204ENST00000427947 NCAPHQ15003 741 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 MSMPQ1L6U9 139 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 NBPF9Q3BBW0 867 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 SOGA3Q5TF21 947 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 INTS5Q6P9B9 1019 aaKnown RBP6.38□□□□□ -1.39
USP40-204ENST00000427947 PIWIL2Q8TC59 973 aaKnown RBP6.38□□□□□ -1.39
USP40-204ENST00000427947 HAUS7Q99871 368 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 ASCC2Q9H1I8 757 aaPredicted RBP6.38□□□□□ -1.39
USP40-204ENST00000427947 PCDHB12Q9Y5F1 795 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 ST14Q9Y5Y6 855 aa6.38□□□□□ -1.39
USP40-204ENST00000427947 CCDC85CA6NKD9 419 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 IGSF3O75054 1194 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 SSTR4P31391 388 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 CLCN7P51798 805 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 HEATR6Q6AI08 1181 aaKnown RBP6.37□□□□□ -1.39
USP40-204ENST00000427947 C7orf61Q8IZ16 206 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 HSPA12BQ96MM6 686 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 PRDM14Q9GZV8 571 aa6.37□□□□□ -1.39
USP40-204ENST00000427947 TMEM265A0A087WTH1 108 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 SHISA3A0PJX4 238 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 SHOXO15266 292 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 CBFA2T2O43439 604 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 EPHX1P07099 455 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 NMIQ13287 307 aaPredicted RBP6.36□□□□□ -1.39
USP40-204ENST00000427947 CLEC16AQ2KHT3 1053 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 MRM1Q6IN84 353 aaKnown RBP6.36□□□□□ -1.39
USP40-204ENST00000427947 TMC3Q7Z5M5 1100 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 HRASLS5Q96KN8 279 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 GPR62Q9BZJ7 368 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 LNPKQ9C0E8 428 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 GFOD1Q9NXC2 390 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 SIRPGQ9P1W8 387 aa6.36□□□□□ -1.39
USP40-204ENST00000427947 PITPNM2Q9BZ72 1349 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 MED26O95402 600 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 ITGA4P13612 1032 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms