RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RFX5P48382 616 aaPredicted RBP11.02□□□□□ -0.64
USP54-205ENST00000424265 ICA1Q05084 483 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 SCRN1Q12765 414 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 WTAPQ15007 396 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 FBXW10Q5XX13 1052 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 RPS6KL1Q9Y6S9 549 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 USP17L3A6NCW0 530 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 USP17L4A6NCW7 530 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 ARHGAP27Q6ZUM4 889 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 USP17L1Q7RTZ2 530 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 HDXQ7Z353 690 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 ATG9AQ7Z3C6 839 aa11.02□□□□□ -0.64
USP54-205ENST00000424265 HOOK1Q9UJC3 728 aaKnown RBP11.02□□□□□ -0.64
USP54-205ENST00000424265 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.02□□□□□ -0.64
USP54-205ENST00000424265 ECEL1O95672 775 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 MYBL2P10244 700 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 ADORA1P30542 326 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 VPS53Q5VIR6 699 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 LUZP1Q86V48 1076 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 GDPD2Q9HCC8 539 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 RGPD2P0DJD1 1756 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 KDM3BQ7LBC6 1761 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 GOLGA6L9A6NEM1 432 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 CASP7P55210 303 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 EVCP57679 992 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 DHX32Q7L7V1 743 aaKnown RBP11.02□□□□□ -0.65
USP54-205ENST00000424265 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.02□□□□□ -0.65
USP54-205ENST00000424265 SWAP70Q9UH65 585 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 POLRMTO00411 1230 aaKnown RBP11.02□□□□□ -0.65
USP54-205ENST00000424265 CPP00450 1065 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 RPS6KA3P51812 740 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 GIMAP6Q6P9H5 292 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 MIGA1Q8NAN2 632 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 CD2APQ9Y5K6 639 aa11.02□□□□□ -0.65
USP54-205ENST00000424265 GOLGA8AA7E2F4 631 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 GOLGA8BA8MQT2 603 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 ISM2Q6H9L7 571 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 RASSF8Q8NHQ8 419 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 FAM200AQ8TCP9 573 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 POTEB2H3BUK9 544 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 GSPT1P15170 499 aaKnown RBP11.01□□□□□ -0.65
USP54-205ENST00000424265 AFAP1L1Q8TED9 768 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 GJA3Q9Y6H8 435 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 ENO4A6NNW6 628 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 C21orf2O43822 256 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 HOXA10P31260 410 aaPredicted RBP11.01□□□□□ -0.65
USP54-205ENST00000424265 ADD2P35612 726 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 CIAPIN1Q6FI81 312 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 ARL10Q8N8L6 244 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 MICAL1Q8TDZ2 1067 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 TSPAN18Q96SJ8 248 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 FIBPO43427 364 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 LAMB3Q13751 1172 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 PI4K2BQ8TCG2 481 aa11.01□□□□□ -0.65
USP54-205ENST00000424265 GRIN3BO60391 1043 aa11□□□□□ -0.65
USP54-205ENST00000424265 PHACTR2O75167 634 aa11□□□□□ -0.65
USP54-205ENST00000424265 PECAM1P16284 738 aaPredicted RBP11□□□□□ -0.65
USP54-205ENST00000424265 USP48Q86UV5 1035 aa11□□□□□ -0.65
USP54-205ENST00000424265 VIRMAQ69YN4 1812 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 CCNHP51946 323 aaPredicted RBP11□□□□□ -0.65
USP54-205ENST00000424265 TRIM42Q8IWZ5 723 aa11□□□□□ -0.65
USP54-205ENST00000424265 ARMT1Q9H993 441 aa11□□□□□ -0.65
USP54-205ENST00000424265 EHMT1Q9H9B1 1298 aa11□□□□□ -0.65
USP54-205ENST00000424265 DNAI1Q9UI46 699 aa11□□□□□ -0.65
USP54-205ENST00000424265 PDS5AQ29RF7 1337 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 TNKS1BP1Q9C0C2 1729 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 MAP3K11Q16584 847 aa11□□□□□ -0.65
USP54-205ENST00000424265 IFIT1BQ5T764 474 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 ARMC3Q5W041 872 aa11□□□□□ -0.65
USP54-205ENST00000424265 SYNE4Q8N205 404 aa11□□□□□ -0.65
USP54-205ENST00000424265 AKT1S1Q96B36 256 aa11□□□□□ -0.65
USP54-205ENST00000424265 CD209Q9NNX6 404 aa11□□□□□ -0.65
USP54-205ENST00000424265 FILIP1LQ4L180 1135 aa11□□□□□ -0.65
USP54-205ENST00000424265 CNNM3Q8NE01 707 aa11□□□□□ -0.65
USP54-205ENST00000424265 CCDC47Q96A33 483 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 UPF3BQ9BZI7 483 aaKnown RBP11□□□□□ -0.65
USP54-205ENST00000424265 LRRC4BQ9NT99 713 aa11□□□□□ -0.65
USP54-205ENST00000424265 ORC3Q9UBD5 711 aaPredicted RBP11□□□□□ -0.65
USP54-205ENST00000424265 ZNF609O15014 1411 aa11□□□□□ -0.65
USP54-205ENST00000424265 PICALMQ13492 652 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 LARP1BQ659C4 914 aaKnown RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 DCAF15Q66K64 600 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 SEPT14Q6ZU15 432 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 CCAR1Q8IX12 1150 aaKnown RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 CAMKK2Q96RR4 588 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 H2AFXP16104 143 aaPredicted RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 HSPA4P34932 840 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 HAND2P61296 217 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 GPSM2P81274 684 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 SSRP1Q08945 709 aaKnown RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 RASGRF1Q13972 1273 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 TTLL12Q14166 644 aaPredicted RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 LRP10Q7Z4F1 713 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 FAM53CQ9NYF3 392 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 ZBTB43O43298 467 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 TM4SF1P30408 202 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 METAP2P50579 478 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-205ENST00000424265 ACBD5Q5T8D3 534 aaPredicted RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 RUFY3Q7L099 469 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 DHX36Q9H2U1 1008 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms