RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PARP1P09874 1014 aaKnown RBP19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 NF2P35240 595 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 CAP2P40123 477 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 GRM4Q14833 912 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 USP48Q86UV5 1035 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 WASF1Q92558 559 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 SLC26A6Q9BXS9 759 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 SH2D4AQ9H788 454 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 GINM1Q9NU53 330 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 ISY1Q9ULR0 285 aaKnown RBP19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 CLEC11AQ9Y240 323 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 DOCK1Q14185 1865 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 VPS37CA5D8V6 355 aaPredicted RBP19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 STX6O43752 255 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 EEF2P13639 858 aaKnown RBP19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 IFNAR1P17181 557 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 NOVP48745 357 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 MAP3K10Q02779 954 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 STK36Q9NRP7 1315 aa19.9■□□□□ 0.78
CCDC28B-202ENST00000421922 DTNBO60941 627 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 PPFIA3O75145 1194 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 TOMM70O94826 608 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 SYT1P21579 422 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 TMTC3Q6ZXV5 915 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 PHKBQ93100 1093 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 LZTS2Q9BRK4 669 aa19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 FAM217BQ9NTX9 383 aaPredicted RBP19.89■□□□□ 0.77
CCDC28B-202ENST00000421922 ADM5C9JUS6 153 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 CTNND1O60716 968 aaKnown RBP19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 FMNL1O95466 1100 aaPredicted RBP19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 TRIM29Q14134 588 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 CCDC96Q2M329 555 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 PRAMEF18Q5VWM3 479 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 CCDC82Q8N4S0 544 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 WRNIP1Q96S55 665 aa19.88■□□□□ 0.77
CCDC28B-202ENST00000421922 VEGFAP15692 232 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 FOSBP53539 338 aa19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 RRP1BQ14684 758 aaKnown RBP19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 SHROOM1Q2M3G4 852 aaPredicted RBP19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 ASPRV1Q53RT3 343 aa19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 PICK1Q9NRD5 415 aa19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 RBM27Q9P2N5 1060 aaKnown RBP19.87■□□□□ 0.77
CCDC28B-202ENST00000421922 PPP1R12BO60237 982 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 PLEKHA8P1O95397 391 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 DEXIO95424 95 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 GUCY1A2P33402 732 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 NTRK3Q16288 839 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 FOXD4L5Q5VV16 416 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 FOXD4L4Q8WXT5 416 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 MKL1Q969V6 931 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 C8orf76Q96K31 380 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 FEZ1Q99689 392 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 RNF26Q9BY78 433 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 GOPCQ9HD26 462 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 NMRK2Q9NPI5 230 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 SYNPO2Q9UMS6 1093 aa19.86■□□□□ 0.77
CCDC28B-202ENST00000421922 PHF20L1A8MW92 1017 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 PDHBP11177 359 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 XBP1P17861 261 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 CMTR1Q8N1G2 835 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 DCAF4Q8WV16 495 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 ALG1Q9BT22 464 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 MAD2L2Q9UI95 211 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 CNTNAP5Q8WYK1 1306 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 USP17L5A8MUK1 530 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 BRD1O95696 1058 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 ZSCAN22P10073 491 aaPredicted RBP19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 PKP1Q13835 747 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 PRKG1Q13976 671 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 GPATCH4Q5T3I0 446 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 SLFN13Q68D06 897 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 USP17L2Q6R6M4 530 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 CDC37L1Q7L3B6 337 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 CDCA5Q96FF9 252 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 RRAGCQ9HB90 399 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 ATP6V1DQ9Y5K8 247 aa19.85■□□□□ 0.77
CCDC28B-202ENST00000421922 FRMPD2Q68DX3 1309 aaPredicted RBP19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 PALM3A6NDB9 673 aaPredicted RBP19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 POTECB2RU33 542 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 KLRF2D3W0D1 207 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 GOLGA8HP0CJ92 632 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 SLC1A4P43007 532 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 IREB2P48200 963 aaKnown RBP19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 JAG1P78504 1218 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 TTLL12Q14166 644 aaPredicted RBP19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 SCYL3Q8IZE3 742 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 GMCL1P1Q8NEA9 526 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 GBP4Q96PP9 640 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 AS3MTQ9HBK9 375 aa19.84■□□□□ 0.77
CCDC28B-202ENST00000421922 SSC5DA1L4H1 1573 aa19.83■□□□□ 0.77
CCDC28B-202ENST00000421922 PRPF3O43395 683 aaKnown RBP19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 FDPSP14324 419 aaKnown RBP19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 INPP5BP32019 993 aa19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 ZNF543Q08ER8 600 aa19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 STAG2Q8N3U4 1231 aa19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 SRBD1Q8N5C6 995 aaKnown RBP19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 TNPO1Q92973 898 aaKnown RBP19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 GPCPD1Q9NPB8 672 aa19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 SEC63Q9UGP8 760 aaKnown RBP19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 ZNF112Q9UJU3 913 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms