RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 DEFB115Q30KQ5 88 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 LDLRAD1Q5T700 205 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 SAPCD2Q86UD0 394 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 DGKHQ86XP1 1220 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 CCDC102AQ96A19 550 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 WNK4Q96J92 1243 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 MTA3Q9BTC8 594 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 ZSWIM6Q9HCJ5 1215 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 PLSCR2Q9NRY7 297 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 NYAP2Q9P242 653 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 PHIPQ8WWQ0 1821 aa9.91□□□□□ -0.82
TRIM48-201ENST00000417545 C19orf81C9J6K1 198 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 SH2B2O14492 632 aaPredicted RBP9.9□□□□□ -0.82
TRIM48-201ENST00000417545 ZBTB48P10074 688 aaPredicted RBP9.9□□□□□ -0.82
TRIM48-201ENST00000417545 SNAPC2Q13487 334 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 USP17L2Q6R6M4 530 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 ENAHQ8N8S7 591 aaPredicted RBP9.9□□□□□ -0.82
TRIM48-201ENST00000417545 PNMA1Q8ND90 353 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 IL27Q8NEV9 243 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 NUP133Q8WUM0 1156 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 BRF1Q92994 677 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 CHMP4CQ96CF2 233 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 TMEM47Q9BQJ4 181 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 CTDP1Q9Y5B0 961 aaPredicted RBP9.9□□□□□ -0.82
TRIM48-201ENST00000417545 SLC12A7Q9Y666 1083 aa9.9□□□□□ -0.82
TRIM48-201ENST00000417545 IGKV6D-41A0A0C4DH26 115 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 KLF18A0A0U1RQI7 1052 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 GOLGA8BA8MQT2 603 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 DHX16O60231 1041 aaKnown RBP9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CALM1P0DP23 149 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CALM2P0DP24 149 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CALM3P0DP25 149 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CETPP11597 493 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 GUCY1A2P33402 732 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 GTF2A2P52657 109 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 HMGCS2P54868 508 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 BACE1P56817 501 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 ANTXR2P58335 489 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 C1QTNF8P60827 252 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 JAG1P78504 1218 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 PABPC4Q13310 644 aaKnown RBP eCLIP9.9□□□□□ -0.83
TRIM48-201ENST00000417545 SLFN13Q68D06 897 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 RASAL3Q86YV0 1011 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CTCFLQ8NI51 663 aaPredicted RBP9.9□□□□□ -0.83
TRIM48-201ENST00000417545 WDR18Q9BV38 432 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 TANGO6Q9C0B7 1094 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 LY9Q9HBG7 655 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 IL17RBQ9NRM6 502 aa9.9□□□□□ -0.83
TRIM48-201ENST00000417545 CCL15-CCL14A0A0B4J2E2 113 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 GOLGA8AA7E2F4 631 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 CXCL11O14625 94 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 IRF6O14896 467 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 ZBTB43O43298 467 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 DDAH1O94760 285 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SLC10A3P09131 477 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 KIF5BP33176 963 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 LIFRP42702 1097 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SLC1A4P43007 532 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 AK2P54819 239 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 EXOSC10Q01780 885 aaKnown RBP9.89□□□□□ -0.83
TRIM48-201ENST00000417545 APOBRQ0VD83 1088 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SREBF2Q12772 1141 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 CCL15Q16663 113 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SPRYD7Q5W111 196 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 OTUD7BQ6GQQ9 843 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 CYP4F22Q6NT55 531 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 FASTKD5Q7L8L6 764 aaKnown RBP9.89□□□□□ -0.83
TRIM48-201ENST00000417545 MICU3Q86XE3 530 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 HSCBQ8IWL3 235 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 ZNF654Q8IZM8 581 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SPICE1Q8N0Z3 855 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 ACER1Q8TDN7 264 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 HHIPL1Q96JK4 782 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.89□□□□□ -0.83
TRIM48-201ENST00000417545 KIAA1683Q9H0B3 1180 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 VCPKMTQ9H867 229 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 SYNPO2Q9UMS6 1093 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 TMX2Q9Y320 296 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 AFG3L2Q9Y4W6 797 aa9.89□□□□□ -0.83
TRIM48-201ENST00000417545 PTPRFP10586 1907 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 LOC285556D6RIA3 1793 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 MANSC4A6NHS7 340 aaPredicted RBP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 F5H6K3 240 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 WDR46O15213 610 aaKnown RBP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 PARP1P09874 1014 aaKnown RBP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 HSPA6P17066 643 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 MCM2P49736 904 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 METAP2P50579 478 aaKnown RBP eCLIP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 IRX3P78415 501 aaPredicted RBP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 KLRC3Q07444 240 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 STK3Q13188 491 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 NOGQ13253 232 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 SEC23AQ15436 765 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 CPLX2Q6PUV4 134 aaKnown RBP9.88□□□□□ -0.83
TRIM48-201ENST00000417545 RAB11FIP4Q86YS3 637 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 CCDC144CPQ8IYA2 1237 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 IGDCC4Q8TDY8 1250 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 DCAF4Q8WV16 495 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 LPAR1Q92633 364 aa9.88□□□□□ -0.83
TRIM48-201ENST00000417545 CAPNS2Q96L46 248 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms