RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PPP1R12BO60237 982 aaPredicted RBP17.1■□□□□ 0.33
USP4-203ENST00000415188 CDC25BP30305 580 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 TM4SF4P48230 202 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 GUCY1B3Q02153 619 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 CEBPZQ03701 1054 aaKnown RBP17.1■□□□□ 0.33
USP4-203ENST00000415188 AKNAD1Q5T1N1 836 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 SYNE3Q6ZMZ3 975 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 TBC1D22AQ8WUA7 517 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 WASF1Q92558 559 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 SLC10A4Q96EP9 437 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 GOLPH3LQ9H4A5 285 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 EPB41L4AQ9HCS5 686 aaPredicted RBP17.1■□□□□ 0.33
USP4-203ENST00000415188 ANO10Q9NW15 660 aa17.1■□□□□ 0.33
USP4-203ENST00000415188 NEDD4P46934 1319 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 B4E1Z4 1266 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 SPTLC2O15270 562 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 AP5Z1O43299 807 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 USP2O75604 605 aaPredicted RBP17.09■□□□□ 0.33
USP4-203ENST00000415188 SART3Q15020 963 aaKnown RBP17.09■□□□□ 0.33
USP4-203ENST00000415188 SF3A1Q15459 793 aaKnown RBP17.09■□□□□ 0.33
USP4-203ENST00000415188 TMEM67Q5HYA8 995 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 SARM1Q6SZW1 724 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 LY9Q9HBG7 655 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 SPTLC3Q9NUV7 552 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 PCDHA7Q9UN72 937 aa17.09■□□□□ 0.33
USP4-203ENST00000415188 GOLGA8AA7E2F4 631 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 GSG1L2A8MUP6 293 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 ZBTB22O15209 634 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 CACNB3P54284 484 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 PLCB2Q00722 1185 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 SREBF2Q12772 1141 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 TNFAIP1Q13829 316 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 ANO1Q5XXA6 986 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 TMED8Q6PL24 325 aaPredicted RBP17.08■□□□□ 0.32
USP4-203ENST00000415188 MFSD6Q6ZSS7 791 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 LUZP1Q86V48 1076 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 PLA2G4DQ86XP0 818 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 FMR1NBQ8N0W7 255 aaPredicted RBP17.08■□□□□ 0.32
USP4-203ENST00000415188 TMTC2Q8N394 836 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 TEPSINQ96N21 525 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 ALG1Q9BT22 464 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 FTOQ9C0B1 505 aaKnown RBP eCLIP17.08■□□□□ 0.32
USP4-203ENST00000415188 TMEM39BQ9GZU3 492 aa17.08■□□□□ 0.32
USP4-203ENST00000415188 PDS5AQ29RF7 1337 aaKnown RBP17.08■□□□□ 0.32
USP4-203ENST00000415188 ZNF75DP51815 510 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 HDLBPQ00341 1268 aaKnown RBP17.07■□□□□ 0.32
USP4-203ENST00000415188 TRIM29Q14134 588 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 NFXL1Q6ZNB6 911 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 TEKT1Q969V4 418 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 WNK4Q96J92 1243 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 NAT10Q9H0A0 1025 aaKnown RBP17.07■□□□□ 0.32
USP4-203ENST00000415188 DNAJC25Q9H1X3 360 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 ARMT1Q9H993 441 aa17.07■□□□□ 0.32
USP4-203ENST00000415188 CCDC69A6NI79 296 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 GOLGA6L19H0YKK7 550 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 IFIT3O14879 490 aaKnown RBP17.06■□□□□ 0.32
USP4-203ENST00000415188 SEMA3EO15041 775 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 GJA5P36382 358 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 IREB2P48200 963 aaKnown RBP17.06■□□□□ 0.32
USP4-203ENST00000415188 TDO2P48775 406 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 NTRK3Q16288 839 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 ZNF296Q8WUU4 475 aaPredicted RBP17.06■□□□□ 0.32
USP4-203ENST00000415188 R3HDMLQ9H3Y0 253 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 LRP2BPQ9P2M1 347 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 ANAPC4Q9UJX5 808 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 SLC12A7Q9Y666 1083 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 SLC4A4Q9Y6R1 1079 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 MAST2Q6P0Q8 1798 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 MYH13Q9UKX3 1938 aa17.06■□□□□ 0.32
USP4-203ENST00000415188 IGSF3O75054 1194 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 PPP6R2O75170 966 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 IFNAR1P17181 557 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 CMA1P23946 247 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 NOLC1Q14978 699 aaKnown RBP eCLIP17.05■□□□□ 0.32
USP4-203ENST00000415188 IQCB1Q15051 598 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 PPP2R5BQ15173 497 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 KRT40Q6A162 431 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 APOBEC3HQ6NTF7 200 aaKnown RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 CTU1Q7Z7A3 348 aaKnown RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 CEP57L1Q8IYX8 460 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 ZDHHC15Q96MV8 337 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 DENND2AQ9ULE3 1009 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 CLIC4Q9Y696 253 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 CCDC196A0A1B0GTZ2 297 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 ERICH2A1L162 156 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 FMNL1O95466 1100 aaPredicted RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 ZBTB48P10074 688 aaPredicted RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 PCP11498 1178 aaKnown RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 SSRP1Q08945 709 aaKnown RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 SLC39A14Q15043 492 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 OTUD7BQ6GQQ9 843 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 MICU3Q86XE3 530 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 LCORLQ8N3X6 602 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 WDR66Q8TBY9 1149 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 TIGD1Q96MW7 591 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 TRIM5Q9C035 493 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 TTC12Q9H892 705 aaPredicted RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 SUGT1Q9Y2Z0 365 aa17.05■□□□□ 0.32
USP4-203ENST00000415188 R3HCC1Q9Y3T6 440 aaKnown RBP17.05■□□□□ 0.32
USP4-203ENST00000415188 MANSC4A6NHS7 340 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms