RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ART3Q13508 389 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 RAPH1Q70E73 1250 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 ZNF804AQ7Z570 1209 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PSMB7Q99436 277 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 SPZ1Q9BXG8 430 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 EXOC5O00471 708 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PHKBQ93100 1093 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 RAB20Q9NX57 234 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 SAR1BQ9Y6B6 198 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 MCMDC2Q4G0Z9 681 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 KIF17Q9P2E2 1029 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 LRPPRCP42704 1394 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 NSD3Q9BZ95 1437 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 TMEM232C9JQI7 657 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PRR23D1E9PI22 279 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PRR23D2P0DMB1 279 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 TRIML1Q8N9V2 468 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 PAK1Q13153 545 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 IRAK4Q9NWZ3 460 aa14.62□□□□□ -0.07
CCDC88A-204ENST00000413716 KRIT1O00522 736 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 NBNO60934 754 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 EEF1GP26641 437 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 KHDRBS2Q5VWX1 349 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 RUNDC3BQ96NL0 473 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 GPC4O75487 556 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 DDIT3P35638 169 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 SERPINB10P48595 397 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 TMEM259Q4ZIN3 620 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 ATP6V0A4Q9HBG4 840 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 SRGAP2BP0DMP2 458 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 HDAC4P56524 1084 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 FBXW4P57775 412 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 SPDYE1Q8NFV5 336 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 COG4Q9H9E3 785 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 MROH2BQ7Z745 1585 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 SP4Q02446 784 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 TRIM58Q8NG06 486 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 TUBB6Q9BUF5 446 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 UPF3AQ9H1J1 476 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 EIF3CLB5ME19 914 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 EIF3CQ99613 913 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 CARD6Q9BX69 1037 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 PRPF6O94906 941 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 BLVRAP53004 296 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 ZC3H12BQ5HYM0 836 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 DBF4Q9UBU7 674 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 MAP3K2Q9Y2U5 619 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 TSC1Q92574 1164 aa14.61□□□□□ -0.07
CCDC88A-204ENST00000413716 SMC5Q8IY18 1101 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 NPHP3Q7Z494 1330 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 CCDC85BQ15834 202 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 CSGALNACT2Q8N6G5 542 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 SLFN5Q08AF3 891 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 SYTL2Q9HCH5 934 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 IFNB1P01574 187 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 SEPT2Q15019 361 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 RBM26Q5T8P6 1007 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 PIK3R4Q99570 1358 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 LRRC2Q9BYS8 371 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 NOP56O00567 594 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 C6orf118Q5T5N4 469 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 LZICQ8WZA0 190 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 JPH2Q9BR39 696 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 VPS16Q9H269 839 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 ANKRD50Q9ULJ7 1429 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 LDHAL6AQ6ZMR3 332 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 EP400NLQ6ZTU2 488 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 CYP7A1P22680 504 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 MAP3K10Q02779 954 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 BCAS4Q8TDM0 211 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 ING2Q9H160 280 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 FGD6Q6ZV73 1430 aa14.6□□□□□ -0.07
CCDC88A-204ENST00000413716 PARP1P09874 1014 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 ATF2P15336 505 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 IFNA8P32881 189 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 SLC12A1Q13621 1099 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 FAM133BQ5BKY9 247 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 TRIML2Q8N7C3 387 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 KCNH5Q8NCM2 988 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 BBOF1Q8ND07 529 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 GIPC2Q8TF65 315 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 APOA1P02647 267 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 INHBAP08476 426 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 DYNC1I2Q13409 638 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 PICALMQ13492 652 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 PLIN2Q99541 437 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 SH2D4AQ9H788 454 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 CABP1Q9NZU7 370 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 ZNF219Q9P2Y4 722 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 ZNF263O14978 683 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 HACE1Q8IYU2 909 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 PARD3BQ8TEW8 1205 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 SERPINB2P05120 415 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 IFT88Q13099 833 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 ZC3H18Q86VM9 953 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 HOMEZQ8IX15 550 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 STX19Q8N4C7 294 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 MRPL44Q9H9J2 332 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 ATF7P17544 494 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 RPS6KC1Q96S38 1066 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms