RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 COA7Q96BR5 231 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 JADE2Q9NQC1 790 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 TAB2Q9NYJ8 693 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 PCDHB6Q9Y5E3 794 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 ERLIN1O75477 346 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 MYCLP12524 364 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 NLRP12P59046 1061 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 NKX1-1Q15270 411 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 NELFCDQ8IXH7 590 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 CSRNP2Q9H175 543 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 ARHGEF10LQ9HCE6 1279 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 DCAF8L1A6NGE4 600 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 ICA1Q05084 483 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 SPAG1Q07617 926 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 CALCRLQ16602 461 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 DPCR1Q3MIW9 517 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 LONRF3Q496Y0 759 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 TAF3Q5VWG9 929 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 MIGA2Q7L4E1 593 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 IFNAR1P17181 557 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 CMA1P23946 247 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 SLC39A14Q15043 492 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 DHX37Q8IY37 1157 aaKnown RBP12.58□□□□□ -0.4
PTPRF-204ENST00000412568 BICD1Q96G01 975 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 RTEL1Q9NZ71 1219 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 SERPINB13Q9UIV8 391 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 SEMA3EO15041 775 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 KLRK1P26718 216 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 RDXP35241 583 aaKnown RBP12.58□□□□□ -0.4
PTPRF-204ENST00000412568 FAM114A1Q8IWE2 563 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 IGSF22Q8N9C0 903 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 FLAD1Q8NFF5 587 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 TAF4BQ92750 862 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 CTAGE1Q96RT6 745 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 CSRNP1Q96S65 589 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 SENP2Q9HC62 589 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 RCOR1Q9UKL0 485 aa12.58□□□□□ -0.4
PTPRF-204ENST00000412568 TMCO5BA8MYB1 307 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SORBS3O60504 671 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 PLCD1P51178 756 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SNAP25P60880 206 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 UBXN2AP68543 259 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 C11orf57Q6ZUT1 292 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 KRT25Q7Z3Z0 450 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 CABP7Q86V35 215 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 CSGALNACT2Q8N6G5 542 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SYMPKQ92797 1274 aaKnown RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 DCP1AQ9NPI6 582 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 FANCLQ9NW38 375 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 GUCA1BQ9UMX6 200 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 ITSN1Q15811 1721 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 EIF3JO75822 258 aaKnown RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 TBC1D8BQ0IIM8 1120 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 HERC4Q5GLZ8 1057 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 ZNF772Q68DY9 489 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 INTS5Q6P9B9 1019 aaKnown RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 MB21D2Q8IYB1 491 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 PYCARDQ9ULZ3 195 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 USP32Q8NFA0 1604 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 MACROD2A1Z1Q3 448 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 TMEM232C9JQI7 657 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 BACH1O14867 736 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 USO1O60763 962 aaKnown RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 FAM13AO94988 1023 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 FMNL1O95466 1100 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 DCAF17Q5H9S7 520 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-204ENST00000412568 PIGSQ96S52 555 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 OVOS2A0A0G2JMS6 1433 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SPATA31A5Q5VU36 1347 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SPATA31A7Q8IWB4 1347 aa12.57□□□□□ -0.4
PTPRF-204ENST00000412568 SLU7O95391 586 aaKnown RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 DDIT3P35638 169 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 GPSM2P81274 684 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 EN1Q05925 392 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 PRPF4BQ13523 1007 aaKnown RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 VPS72Q15906 364 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 SLFN13Q68D06 897 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 ZFP91Q96JP5 570 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 PSTPIP2Q9H939 334 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 PRM3Q9NNZ6 103 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 GOLGA6L9A6NEM1 432 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 NTSR2O95665 410 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 LIFRP42702 1097 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 CDR1P51861 262 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 ADKP55263 362 aaKnown RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 RNF26Q9BY78 433 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 LRRC27Q9C0I9 530 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 PCDHA1Q9Y5I3 950 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 ZBTB7AO95365 584 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 CASP1P29466 404 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 CHRNA5P30532 468 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 CDK8P49336 464 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 PRR16Q569H4 304 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 KRBA2Q6ZNG9 492 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 ENAHQ8N8S7 591 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-204ENST00000412568 TMEM87AQ8NBN3 555 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 OXER1Q8TDS5 423 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms