RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ATP5J2-PTCD1G3V325 749 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 RNMTO43148 476 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SH3BP5O60239 455 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SUN1O94901 812 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 MAGEB6Q8N7X4 407 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SDCCAG3Q96C92 435 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 POLKQ9UBT6 870 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 PASKQ96RG2 1323 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 VWA3AA6NCI4 1184 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 LMNAP02545 664 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 EEF1GP26641 437 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 OAS2P29728 719 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 ALCAMQ13740 583 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 TAF12Q16514 161 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 KRT71Q3SY84 523 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 DCAF17Q5H9S7 520 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 FNBP4Q8N3X1 1017 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SNX14Q9Y5W7 946 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 TMEM110-MUSTN1A8MSY1 372 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CEP104O60308 925 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 DBN1Q16643 649 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 DCUN1D2Q6PH85 259 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC89Q8N998 374 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CHURC1Q8WUH1 139 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 GSDMAQ96QA5 445 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 MRPL40Q9NQ50 206 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 RAB20Q9NX57 234 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 SLC5A4Q9NY91 659 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 KIAA1468Q9P260 1216 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 NIP7Q9Y221 180 aaKnown RBP eCLIP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 RTCBQ9Y3I0 505 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 NOC2LQ9Y3T9 749 aaKnown RBP6.72□□□□□ -1.33
SCN1A-203ENST00000409050 RGS12O14924 1447 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CHL1O00533 1208 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 ZBED4O75132 1171 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 LMNB1P20700 586 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 ZSCAN26Q16670 478 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 ISM2Q6H9L7 571 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 MIER3Q7Z3K6 550 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 TMC4Q7Z404 712 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 MAP7D3Q8IWC1 876 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CCDC105Q8IYK2 499 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 C8orf58Q8NAV2 365 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 TRIM35Q9UPQ4 493 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CD2APQ9Y5K6 639 aa6.72□□□□□ -1.33
SCN1A-203ENST00000409050 CFAP43Q8NDM7 1665 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 PPP6R2O75170 966 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 KRT5P13647 590 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 KRT15P19012 456 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 SPATA1Q5VX52 437 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 CABP7Q86V35 215 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 MAPKBP1O60336 1514 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 BACH1O14867 736 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 XPOTO43592 962 aaKnown RBP6.71□□□□□ -1.33
SCN1A-203ENST00000409050 GAP43P17677 238 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 EPHB4P54760 987 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 IL9RQ01113 521 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 ALS2CLQ60I27 953 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 NELFBQ8WX92 580 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 JDP2Q8WYK2 163 aa6.71□□□□□ -1.33
SCN1A-203ENST00000409050 SART1O43290 800 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 DAPK3O43293 454 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PFKFB2O60825 505 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 ATP5HO75947 161 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GCFC2P16383 781 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 RBBP5Q15291 538 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PDCD2Q16342 344 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 SND1Q7KZF4 910 aaKnown RBP eCLIP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 NLRP7Q8WX94 980 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GTF3C6Q969F1 213 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 DHTKD1Q96HY7 919 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 TRERF1Q96PN7 1200 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 CARD10Q9BWT7 1032 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 CAPS2Q9BXY5 557 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 RNF216Q9NWF9 866 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 LRRD1A4D1F6 860 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 HIBADHP31937 336 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 TFCP2Q12800 502 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GEN1Q17RS7 908 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GNPTABQ3T906 1256 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GLE1Q53GS7 698 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 KRT39Q6A163 491 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 HOMEZQ8IX15 550 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 TEX11Q8IYF3 940 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 MYOCDQ8IZQ8 938 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 KIRREL3Q8IZU9 778 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 GSDMBQ8TAX9 411 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 SNX29Q8TEQ0 813 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PBKQ96KB5 322 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 LMBRD1Q9NUN5 540 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 EPS15L1Q9UBC2 864 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 MBD4O95243 580 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 TTC4O95801 387 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 XRCC5P13010 732 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PPM1FP49593 454 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 STX17P56962 302 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 CALCRLQ16602 461 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 MUM1Q2TAK8 710 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 LETM2Q2VYF4 491 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms