RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CTCFLQ8NI51 663 aaPredicted RBP16.59■□□□□ 0.25
SKA1-202ENST00000398452 KIF12Q96FN5 646 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 CAPNS2Q96L46 248 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 TEPSINQ96N21 525 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 ARHGEF10LQ9HCE6 1279 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 GPHNQ9NQX3 736 aaPredicted RBP16.59■□□□□ 0.25
SKA1-202ENST00000398452 KIF3AQ9Y496 699 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 PLIN4Q96Q06 1357 aa16.59■□□□□ 0.25
SKA1-202ENST00000398452 ADM5C9JUS6 153 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 NMT2O60551 498 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 PFKFB2O60825 505 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 GH2P01242 217 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 PDIA3P30101 505 aaKnown RBP16.58■□□□□ 0.24
SKA1-202ENST00000398452 KIF5BP33176 963 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 EVCP57679 992 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 CCT2P78371 535 aaKnown RBP16.58■□□□□ 0.24
SKA1-202ENST00000398452 ICA1Q05084 483 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 COL9A3Q14050 684 aaPredicted RBP16.58■□□□□ 0.24
SKA1-202ENST00000398452 TTLL12Q14166 644 aaPredicted RBP16.58■□□□□ 0.24
SKA1-202ENST00000398452 SEC23AQ15436 765 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 APOA5Q6Q788 366 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 CEP95Q96GE4 821 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 INTS4Q96HW7 963 aaKnown RBP16.58■□□□□ 0.24
SKA1-202ENST00000398452 SH2D4AQ9H788 454 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 WBP1LQ9NX94 342 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 MTMR4Q9NYA4 1195 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 PGAP2Q9UHJ9 254 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 SMC3Q9UQE7 1217 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 TRPM7Q96QT4 1865 aa16.58■□□□□ 0.24
SKA1-202ENST00000398452 CTNND1O60716 968 aaKnown RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 AOC2O75106 756 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 CAP2P40123 477 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 IREB2P48200 963 aaKnown RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 CTCFP49711 727 aaPredicted RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 MAP3K10Q02779 954 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 PRAMEF18Q5VWM3 479 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 NECAB1Q8N987 351 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 PNMA1Q8ND90 353 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 ANKS1AQ92625 1134 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 GTF3C6Q969F1 213 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 CWC22Q9HCG8 908 aaKnown RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 PICK1Q9NRD5 415 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 IL17RBQ9NRM6 502 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 RBM28Q9NW13 759 aaKnown RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 CLIP2Q9UDT6 1046 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 BRPF3Q9ULD4 1205 aa16.57■□□□□ 0.24
SKA1-202ENST00000398452 POLR2AP24928 1970 aaKnown RBP16.57■□□□□ 0.24
SKA1-202ENST00000398452 RAD21O60216 631 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 ECE1P42892 770 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 CUL4AQ13619 759 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 SEPT2Q15019 361 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 RTN1Q16799 776 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 CDAN1Q8IWY9 1227 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 NKX2-3Q8TAU0 364 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 CDCA5Q96FF9 252 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 WRNIP1Q96S55 665 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 TMEM47Q9BQJ4 181 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 LLPHQ9BRT6 129 aaKnown RBP16.56■□□□□ 0.24
SKA1-202ENST00000398452 AS3MTQ9HBK9 375 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 ZBTB21Q9ULJ3 1066 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 ISY1Q9ULR0 285 aaKnown RBP16.56■□□□□ 0.24
SKA1-202ENST00000398452 TLL2Q9Y6L7 1015 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 MYH8P13535 1937 aa16.56■□□□□ 0.24
SKA1-202ENST00000398452 LARGE1O95461 756 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 SLURP2P0DP57 97 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 GNAQP50148 359 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 HMGN5P82970 282 aaKnown RBP16.55■□□□□ 0.24
SKA1-202ENST00000398452 AKAP17AQ02040 695 aaKnown RBP16.55■□□□□ 0.24
SKA1-202ENST00000398452 PRKG1Q13976 671 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 ARMC9Q7Z3E5 817 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 RAB11FIP4Q86YS3 637 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 CCDC144CPQ8IYA2 1237 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 FAM184AQ8NB25 1140 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 NYAP2Q9P242 653 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 CSADQ9Y600 493 aa16.55■□□□□ 0.24
SKA1-202ENST00000398452 IGKV6D-41A0A0C4DH26 115 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 ATMINO43313 823 aaPredicted RBP16.54■□□□□ 0.24
SKA1-202ENST00000398452 EEF2P13639 858 aaKnown RBP16.54■□□□□ 0.24
SKA1-202ENST00000398452 MAP2K1Q02750 393 aaPredicted RBP16.54■□□□□ 0.24
SKA1-202ENST00000398452 SCRN1Q12765 414 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 TRIM22Q8IYM9 498 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 FANCBQ8NB91 859 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 FEZ1Q99689 392 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 MYL10Q9BUA6 226 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 SENP2Q9HC62 589 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 TSKSQ9UJT2 592 aa16.54■□□□□ 0.24
SKA1-202ENST00000398452 PARP1P09874 1014 aaKnown RBP16.53■□□□□ 0.24
SKA1-202ENST00000398452 HSPA8P11142 646 aaKnown RBP16.53■□□□□ 0.24
SKA1-202ENST00000398452 RXRAP19793 462 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 MAP3K9P80192 1104 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 RCSD1Q6JBY9 416 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 SAPCD2Q86UD0 394 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 SCYL3Q8IZE3 742 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 LRRC47Q8N1G4 583 aaKnown RBP16.53■□□□□ 0.24
SKA1-202ENST00000398452 MAP3K14Q99558 947 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 LZTS2Q9BRK4 669 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 BEGAINQ9BUH8 593 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.53■□□□□ 0.24
SKA1-202ENST00000398452 GOPCQ9HD26 462 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms