RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PPIP5K1Q6PFW1 1433 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 TLR3O15455 904 aaKnown RBP7.94□□□□□ -1.14
UPF2-203ENST00000397053 TRIM14Q14142 442 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 ATL3Q6DD88 541 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 CROCCP2Q86T23 111 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 CCDC84Q86UT8 332 aaPredicted RBP7.94□□□□□ -1.14
UPF2-203ENST00000397053 CCDC170Q8IYT3 715 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 ARHGAP24Q8N264 748 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 FAM149B1Q96BN6 582 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 RILPQ96NA2 401 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 CPSF3Q9UKF6 684 aaKnown RBP7.94□□□□□ -1.14
UPF2-203ENST00000397053 SOS1Q07889 1333 aaPredicted RBP7.94□□□□□ -1.14
UPF2-203ENST00000397053 SMARCA4P51532 1647 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 NCAPD3P42695 1498 aa7.94□□□□□ -1.14
UPF2-203ENST00000397053 POLR2MP0CAP2 368 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ZSCAN20P17040 1043 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ARPP19P56211 112 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 FAM160A1Q05DH4 1040 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 DOK7Q18PE1 504 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ZSCAN23Q3MJ62 389 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 MICALL1Q8N3F8 863 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ARHGEF2Q92974 986 aaKnown RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ZNF594Q96JF6 807 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 BAG1Q99933 345 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 VCX3AQ9NNX9 186 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 C1orf112Q9NSG2 853 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ZRANB1Q9UGI0 708 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 MAGI1Q96QZ7 1491 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 RNF8O76064 485 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 SCNN1DP51172 638 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 CYP2J2P51589 502 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 POLGP54098 1239 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 SH2D4BQ5SQS7 431 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 FAM160B1Q5W0V3 765 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 METTL23Q86XA0 190 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 FAM76AQ8TAV0 307 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 METTL22Q9BUU2 404 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ICA1Q05084 483 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 PAK1Q13153 545 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 HDAC1Q13547 482 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 CERKLQ49MI3 558 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 GCNAQ96QF7 691 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 NACC1Q96RE7 527 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 SLAIN2Q9P270 581 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 FAM8A1Q9UBU6 413 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 PARP2Q9UGN5 583 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 IPO11Q9UI26 975 aaKnown RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ZHX1Q9UKY1 873 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ANGPTL3Q9Y5C1 460 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 OSBPP22059 807 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ATP6V1E1P36543 226 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 PPFIA1Q13136 1202 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 MCTP2Q6DN12 878 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 JADE1Q6IE81 842 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 PEX26Q7Z412 305 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 JPH2Q9BR39 696 aaPredicted RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 NUP58Q9BVL2 599 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 PPP1R12CQ9BZL4 782 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 RIC8AQ9NPQ8 531 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ARHGEF37A1IGU5 675 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 POLR2DO15514 142 aaKnown RBP7.93□□□□□ -1.14
UPF2-203ENST00000397053 ATP2B4P23634 1241 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 BCAMP50895 628 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 TFDP1Q14186 410 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 TMCO4Q5TGY1 634 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 ANO1Q5XXA6 986 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 CABP7Q86V35 215 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 C10orf67Q8IYJ2 551 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 SEPT10Q9P0V9 454 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 BCAP29Q9UHQ4 241 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 POLIQ9UNA4 740 aa7.93□□□□□ -1.14
UPF2-203ENST00000397053 NESP48681 1621 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SMCO2A6NFE2 343 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TBC1D8O95759 1140 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 PDE6AP16499 860 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 STAT1P42224 750 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TNNI3KQ59H18 835 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RUFY3Q7L099 469 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SYCE1Q8N0S2 351 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 DCLK2Q8N568 766 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SPATA5Q8NB90 893 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 MCUQ8NE86 351 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 GDAP1Q8TB36 358 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 ATP6V1E2Q96A05 226 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 HDAC11Q96DB2 347 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 QTRT2Q9H974 415 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 VPS18Q9P253 973 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 FPGT-TNNI3KV9GXZ4 949 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 BNIP3LO60238 219 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 S100BP04271 92 aaPredicted RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 KRT3P12035 628 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SAT1P21673 171 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 HOXC9P31274 260 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 NOLC1Q14978 699 aaKnown RBP eCLIP7.92□□□□□ -1.14
UPF2-203ENST00000397053 PRR16Q569H4 304 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TTC30AQ86WT1 665 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 FBXO11Q86XK2 927 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 GPIHBP1Q8IV16 184 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RBSNQ9H1K0 784 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 POLKQ9UBT6 870 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms