RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 ZMYM1Q5SVZ6 1142 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 MAP3K21Q5TCX8 1036 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 TMEM179Q6ZVK1 233 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 GPR142Q7Z601 462 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 EXOC6Q8TAG9 804 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 FEZ1Q99689 392 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 CRISPLD2Q9H0B8 497 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 STAP2Q9UGK3 403 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 SWAP70Q9UH65 585 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 TAOK2Q9UL54 1235 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 TMX2Q9Y320 296 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 RABGAP1Q9Y3P9 1069 aa10.65□□□□□ -0.7
ATG4A-205ENST00000394892 IGKV6D-41A0A0C4DH26 115 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 EEF2P13639 858 aaKnown RBP10.64□□□□□ -0.71
ATG4A-205ENST00000394892 MX1P20591 662 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 ANKRD45Q5TZF3 282 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 ZSCAN25Q6NSZ9 544 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 CCDC129Q6ZRS4 1044 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 SPICE1Q8N0Z3 855 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 STK11IPQ8N1F8 1099 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 DIS3LQ8TF46 1054 aaKnown RBP10.64□□□□□ -0.71
ATG4A-205ENST00000394892 DEFB118Q96PH6 123 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 FLRT1Q9NZU1 646 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 MYH1P12882 1939 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 ROBO3Q96MS0 1386 aa10.64□□□□□ -0.71
ATG4A-205ENST00000394892 GLRX3O76003 335 aaKnown RBP10.63□□□□□ -0.71
ATG4A-205ENST00000394892 HMGCRP04035 888 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 MAPK4P31152 587 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 DSG3P32926 999 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 PDE1AP54750 535 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 ICA1Q05084 483 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 GIMAP6Q6P9H5 292 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 NECAB2Q7Z6G3 386 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 PLEKHH3Q7Z736 793 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 ATG4CQ96DT6 458 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 CCDC17Q96LX7 622 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 MOV10L1Q9BXT6 1211 aaKnown RBP10.63□□□□□ -0.71
ATG4A-205ENST00000394892 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.63□□□□□ -0.71
ATG4A-205ENST00000394892 VCPKMTQ9H867 229 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 INCENPQ9NQS7 918 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 FBXO28Q9NVF7 368 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 PLXNB2O15031 1838 aa10.63□□□□□ -0.71
ATG4A-205ENST00000394892 NAV1Q8NEY1 1877 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 MINDY4BA8MYZ0 360 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 DLL1O00548 723 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 PRDM1O75626 825 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 XRCC5P13010 732 aaKnown RBP10.62□□□□□ -0.71
ATG4A-205ENST00000394892 PTPREP23469 700 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 CACNB2Q08289 660 aaPredicted RBP10.62□□□□□ -0.71
ATG4A-205ENST00000394892 COG2Q14746 738 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 VPS53Q5VIR6 699 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 SMC5Q8IY18 1101 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 IFNL3Q8IZI9 196 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 REPS2Q8NFH8 660 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 NPLOC4Q8TAT6 608 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 GPATCH3Q96I76 525 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 NUDT12Q9BQG2 462 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 ARPP21Q9UBL0 812 aaPredicted RBP10.62□□□□□ -0.71
ATG4A-205ENST00000394892 ADAMTS5Q9UNA0 930 aa10.62□□□□□ -0.71
ATG4A-205ENST00000394892 PATL2C9JE40 543 aaKnown RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 COBLO75128 1261 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 ZFYP08048 801 aaPredicted RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 CCND3P30281 292 aaPredicted RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 MAP2K5Q13163 448 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 GRB14Q14449 540 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 TMEM132BQ14DG7 1078 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 LHX8Q68G74 356 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 ANKLE1Q8NAG6 615 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 TRPV1Q8NER1 839 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 GTF3C2Q8WUA4 911 aaPredicted RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 NUP88Q99567 741 aaPredicted RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 LNPKQ9C0E8 428 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 PRO3102Q9H379 93 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 KANSL2Q9H9L4 492 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 DOCK3Q8IZD9 2030 aa10.61□□□□□ -0.71
ATG4A-205ENST00000394892 RANBP2P49792 3224 aaKnown RBP10.61□□□□□ -0.71
ATG4A-205ENST00000394892 RPTORQ8N122 1335 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 MGAMO43451 1857 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 A0A0D9SFI3 127 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 SLC15A5A6NIM6 579 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 ERC2O15083 957 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 HOXC6P09630 235 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 PRKAR2AP13861 404 aaKnown RBP10.6□□□□□ -0.71
ATG4A-205ENST00000394892 ERCC3P19447 782 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 SOCS4Q8WXH5 440 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 LPAR1Q92633 364 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 PAWRQ96IZ0 340 aaKnown RBP10.6□□□□□ -0.71
ATG4A-205ENST00000394892 FAM227BQ96M60 508 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 APBA2Q99767 749 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 FSD1Q9BTV5 496 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 TANGO6Q9C0B7 1094 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 SPATC1LQ9H0A9 340 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 HMX1Q9NP08 348 aaPredicted RBP10.6□□□□□ -0.71
ATG4A-205ENST00000394892 HOXC10Q9NYD6 342 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.6□□□□□ -0.71
ATG4A-205ENST00000394892 TRIOBPQ9H2D6 2365 aa10.6□□□□□ -0.71
ATG4A-205ENST00000394892 RLFQ13129 1914 aa10.59□□□□□ -0.71
ATG4A-205ENST00000394892 WDR46O15213 610 aaKnown RBP10.59□□□□□ -0.71
ATG4A-205ENST00000394892 FLOT1O75955 427 aa10.59□□□□□ -0.71
ATG4A-205ENST00000394892 NDUFB10O96000 172 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms