RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 RBM28Q9NW13 759 aaKnown RBP18.15■□□□□ 0.5
PCDH1-203ENST00000394536 KRT83P78385 493 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 TC2NQ8N9U0 490 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 CALML4Q96GE6 196 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 MRPL44Q9H9J2 332 aaKnown RBP18.15■□□□□ 0.5
PCDH1-203ENST00000394536 PARP3Q9Y6F1 533 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 EPN1Q9Y6I3 576 aaPredicted RBP18.15■□□□□ 0.5
PCDH1-203ENST00000394536 MON2Q7Z3U7 1717 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 KDM6AO15550 1401 aaPredicted RBP18.15■□□□□ 0.5
PCDH1-203ENST00000394536 SALL1Q9NSC2 1324 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 RNASE9P60153 205 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 NCAPH2Q6IBW4 605 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 REXO1L1PQ8IX06 675 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 OR8K1Q8NGG5 319 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 COPB1P53618 953 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 KCNQ4P56696 695 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 BRD3Q15059 726 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 GSDMAQ96QA5 445 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 SAP30BPQ9UHR5 308 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 TFAP4Q01664 338 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 NOC4LQ9BVI4 516 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 NAA15Q9BXJ9 866 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 FAM107BQ9H098 131 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 BMP2KQ9NSY1 1161 aaPredicted RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 FBXO2Q9UK22 296 aaPredicted RBP18.14■□□□□ 0.49
PCDH1-203ENST00000394536 MYO6Q9UM54 1294 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 GDAQ9Y2T3 454 aa18.14■□□□□ 0.49
PCDH1-203ENST00000394536 ST5P78524 1137 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 RNF26Q9BY78 433 aaPredicted RBP18.13■□□□□ 0.49
PCDH1-203ENST00000394536 EPB41L4AQ9HCS5 686 aaPredicted RBP18.13■□□□□ 0.49
PCDH1-203ENST00000394536 ANKRD65E5RJM6 399 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 NMT2O60551 498 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 INF2Q27J81 1249 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 SUSD4Q5VX71 490 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 NBPF5PQ86XG9 351 aaPredicted RBP18.13■□□□□ 0.49
PCDH1-203ENST00000394536 GOLGA8HP0CJ92 632 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 CCDC40Q4G0X9 1142 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 SGMS1Q86VZ5 419 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 ABCB6Q9NP58 842 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 ADGRG1Q9Y653 693 aa18.13■□□□□ 0.49
PCDH1-203ENST00000394536 KRT31Q15323 416 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 DHX37Q8IY37 1157 aaKnown RBP18.12■□□□□ 0.49
PCDH1-203ENST00000394536 JAKMIP2Q96AA8 810 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 CARD10Q9BWT7 1032 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 FAM207AQ9NSI2 230 aaPredicted RBP18.12■□□□□ 0.49
PCDH1-203ENST00000394536 SLAIN2Q9P270 581 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 FAN1Q9Y2M0 1017 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 RIMBP3CA6NJZ7 1639 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 RIMBP3BA6NNM3 1639 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 RIMBP3Q9UFD9 1639 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 MCM3P25205 808 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 MRPS25P82663 173 aaKnown RBP18.12■□□□□ 0.49
PCDH1-203ENST00000394536 ANKRD13CQ8N6S4 541 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 CCDC151A5D8V7 595 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 DYMQ7RTS9 669 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 ZNF446Q9NWS9 450 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 ADAM21Q9UKJ8 722 aa18.12■□□□□ 0.49
PCDH1-203ENST00000394536 ZPR1O75312 459 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 RPN1P04843 607 aaKnown RBP18.11■□□□□ 0.49
PCDH1-203ENST00000394536 IBSPP21815 317 aaPredicted RBP18.11■□□□□ 0.49
PCDH1-203ENST00000394536 AMPD3Q01432 767 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 CUL4BQ13620 913 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 DDB1Q16531 1140 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 EHBP1Q8NDI1 1231 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 NLRP3Q96P20 1036 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 UBA5Q9GZZ9 404 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 CPDO75976 1380 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 SCG2P13521 617 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 TXKP42681 527 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 HLTFQ14527 1009 aaKnown RBP eCLIP18.11■□□□□ 0.49
PCDH1-203ENST00000394536 SAR1BQ9Y6B6 198 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 MFAP3LO75121 409 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 PLA2G4AP47712 749 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 CKAP4Q07065 602 aaKnown RBP18.11■□□□□ 0.49
PCDH1-203ENST00000394536 ODF2Q5BJF6 829 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 RAD9BQ6WBX8 426 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 FHOD1Q9Y613 1164 aa18.11■□□□□ 0.49
PCDH1-203ENST00000394536 FAM170AA1A519 330 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 TRIM49BA6NDI0 452 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 MPHOSPH10O00566 681 aaKnown RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 TACC1O75410 805 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 CYP27A1Q02318 531 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 SUGCTQ9HAC7 445 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 HPSEQ9Y251 543 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 MRFAP1Q9Y605 127 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 CCNT1O60563 726 aaKnown RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 H2AFXP16104 143 aaPredicted RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 TOB1P50616 345 aaPredicted RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 PLCD3Q8N3E9 789 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 ALS2CR12Q96Q35 445 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 MEGF6O75095 1541 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 SRGAP2O75044 1071 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 FAM114A1Q8IWE2 563 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 ENAHQ8N8S7 591 aaPredicted RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 IFT81Q8WYA0 676 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 RASSF4Q9H2L5 321 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 LUC7LQ9NQ29 371 aaKnown RBP18.1■□□□□ 0.49
PCDH1-203ENST00000394536 CCDC87Q9NVE4 849 aa18.1■□□□□ 0.49
PCDH1-203ENST00000394536 TFRCP02786 760 aaKnown RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms