RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 HS1BP3Q53T59 392 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 TRIM50Q86XT4 487 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 EXTL1Q92935 676 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 PPP1R10Q96QC0 940 aaKnown RBP1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZKSCAN3Q9BRR0 538 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 ADAM29Q9UKF5 820 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 KIAA1024Q9UPX6 916 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 FAN1Q9Y2M0 1017 aa1.17□□□□□ -2.22
RNU6-540P-201ENST00000384622 NOTOA8MTQ0 251 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 U2SURPO15042 1029 aaKnown RBP1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 FOXN1O15353 648 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 KCNAB3O43448 404 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 EFEMP2O95967 443 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 PNLIPP16233 465 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 ATP1A2P50993 1020 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 ERVFRD-1P60508 538 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 TNK2Q07912 1038 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 GRM2Q14416 872 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 BSPRYQ5W0U4 402 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 TTLL7Q6ZT98 887 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 HDGFL2Q7Z4V5 671 aaPredicted RBP1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 DEPDC4Q8N2C3 294 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 RNF214Q8ND24 703 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 Q8TCH9 128 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 DDX11Q96FC9 970 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 EBF1Q9UH73 591 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 ZNHIT2Q9UHR6 403 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 DUSP13Q9UII6 198 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 CEP131Q9UPN4 1083 aa1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 RBM19Q9Y4C8 960 aaKnown RBP1.16□□□□□ -2.22
RNU6-540P-201ENST00000384622 A0A1W2PP55 124 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 MROH6A6NGR9 719 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 NUDT19A8MXV4 375 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 CCKBRP32239 447 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF200P98182 395 aaPredicted RBP1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 HNRNPUQ00839 825 aaKnown RBP eCLIP1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 SLC14A2Q15849 920 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 PRR16Q569H4 304 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 ADGRG3Q86Y34 549 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 ULK2Q8IYT8 1036 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 MYO19Q96H55 970 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 PLEKHG4BQ96PX9 1271 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZC3H12CQ9C0D7 883 aaKnown RBP1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 CLEC4MQ9H2X3 399 aaPredicted RBP1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 CCDC86Q9H6F5 360 aaKnown RBP1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 JADE2Q9NQC1 790 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 FAM13BQ9NYF5 915 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 TMEM63CQ9P1W3 806 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 CNTN3Q9P232 1028 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 SLAIN2Q9P270 581 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 LRFN2Q9ULH4 789 aa1.15□□□□□ -2.23
RNU6-540P-201ENST00000384622 TMEM191CA6NGB0 347 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 A6NHS1 94 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 PIK3CDO00329 1044 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZMYND10O75800 440 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 SLITRK5O94991 958 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 KRT4P19013 534 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 ARL4AP40617 200 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 TUBA3CQ13748 450 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 KIF4BQ2VIQ3 1234 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 RUSC1-AS1Q66K80 236 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 LAIR1Q6GTX8 287 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 TUBA3EQ6PEY2 450 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 FIBCD1Q8N539 461 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF483Q8TF39 744 aaPredicted RBP1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 LINC01599Q8WXQ3 324 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 VTI1AQ96AJ9 217 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 ADOQ96SZ5 270 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 BHLHE41Q9C0J9 482 aaPredicted RBP1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 TRIT1Q9H3H1 467 aaKnown RBP1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 ELP3Q9H9T3 547 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 PCDHGC5Q9Y5F6 944 aa1.14□□□□□ -2.23
RNU6-540P-201ENST00000384622 METTL12A8MUP2 240 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 PLSCR1O15162 318 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 NRDCO43847 1150 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZNF862O60290 1169 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 LMNAP02545 664 aaKnown RBP1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 C1SP09871 688 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 ATF2P15336 505 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 KIR3DL1P43629 444 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 PDE4DQ08499 809 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 GAB4Q2WGN9 574 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 KRT71Q3SY84 523 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 FNDC7Q5VTL7 733 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZC3H14Q6PJT7 736 aaKnown RBP1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 PLEKHH3Q7Z736 793 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 GPR150Q8NGU9 434 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 SMARCC1Q92922 1105 aaPredicted RBP1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 HINFPQ9BQA5 517 aa1.13□□□□□ -2.23
RNU6-540P-201ENST00000384622 PALM3A6NDB9 673 aaPredicted RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 MYADML2A6NDP7 307 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 ZAR1LA6NP61 321 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 PRR23D1E9PI22 279 aaPredicted RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 TRIM38O00635 465 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 USP2O75604 605 aaPredicted RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 PRR23D2P0DMB1 279 aaPredicted RBP1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 IGFBP4P22692 258 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 KRTAP10-8P60410 259 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 CLDN10P78369 228 aa1.12□□□□□ -2.23
RNU6-540P-201ENST00000384622 AP3B2Q13367 1082 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms