RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CTNNA3Q9UI47 895 aa15.83■□□□□ 0.12
VPS28-202ENST00000377348 USP17L15C9J2P7 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L13C9JLJ4 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L11C9JVI0 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L18D6R9N7 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L22D6RA61 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L17D6RBQ6 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L19D6RCP7 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L20D6RJB6 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 CDC45O75419 566 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 CTGFP29279 349 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 HERVK_113P62684 666 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 LACTBP83111 547 aaPredicted RBP15.82■□□□□ 0.12
VPS28-202ENST00000377348 USP17L24Q0WX57 530 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 CATSPERGQ6ZRH7 1159 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 CTU1Q7Z7A3 348 aaKnown RBP15.82■□□□□ 0.12
VPS28-202ENST00000377348 LRRC47Q8N1G4 583 aaKnown RBP15.82■□□□□ 0.12
VPS28-202ENST00000377348 ANKRD13CQ8N6S4 541 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 ERO1AQ96HE7 468 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 LSG1Q9H089 658 aaKnown RBP15.82■□□□□ 0.12
VPS28-202ENST00000377348 RNF41Q9H4P4 317 aaPredicted RBP15.82■□□□□ 0.12
VPS28-202ENST00000377348 LAMA4Q16363 1823 aa15.82■□□□□ 0.12
VPS28-202ENST00000377348 ZSWIM8A7E2V4 1837 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 TTLL1O95922 423 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 HTTP42858 3142 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 POTEEQ6S8J3 1075 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 NUP88Q99567 741 aaPredicted RBP15.81■□□□□ 0.12
VPS28-202ENST00000377348 TANGO6Q9C0B7 1094 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 MCOLN1Q9GZU1 580 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 GOPCQ9HD26 462 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 STX8Q9UNK0 236 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 TRIM17Q9Y577 477 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 RBM8AQ9Y5S9 174 aaKnown RBP15.81■□□□□ 0.12
VPS28-202ENST00000377348 TAF6LQ9Y6J9 622 aa15.81■□□□□ 0.12
VPS28-202ENST00000377348 U3KPZ7 1027 aaPredicted RBP15.81■□□□□ 0.12
VPS28-202ENST00000377348 F5H6K3 240 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 CYP21A2P08686 494 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 KLRC3Q07444 240 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 KIAA1211Q6ZU35 1233 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 OTOP1Q7RTM1 612 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 LPAR1Q92633 364 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 MAP4K1Q92918 833 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 MKL1Q969V6 931 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 CHMP4CQ96CF2 233 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 TXNRD2Q9NNW7 524 aa15.8■□□□□ 0.12
VPS28-202ENST00000377348 SPDYE16A6NNV3 312 aaPredicted RBP15.79■□□□□ 0.12
VPS28-202ENST00000377348 B4E1Z4 1266 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 WDR46O15213 610 aaKnown RBP15.79■□□□□ 0.12
VPS28-202ENST00000377348 KDM4AO75164 1064 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 NDUFB10O96000 172 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 PCP11498 1178 aaKnown RBP15.79■□□□□ 0.12
VPS28-202ENST00000377348 GCLCP48506 637 aaPredicted RBP15.79■□□□□ 0.12
VPS28-202ENST00000377348 FAM110CQ1W6H9 321 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 FAM83BQ5T0W9 1011 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 SAMD1Q6SPF0 538 aaPredicted RBP15.79■□□□□ 0.12
VPS28-202ENST00000377348 CASC1Q6TDU7 716 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 ESR2Q92731 530 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 ZKSCAN3Q9BRR0 538 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 PAGR1Q9BTK6 254 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 EFCC1Q9HA90 598 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 ANO2Q9NQ90 1003 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 RBPJLQ9UBG7 517 aa15.79■□□□□ 0.12
VPS28-202ENST00000377348 CNMDO75829 334 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 FLOT1O75955 427 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 PSMC4P43686 418 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 KIF22Q14807 665 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 RASGRP2Q7LDG7 609 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 TRIM47Q96LD4 638 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 TCP11L1Q9NUJ3 509 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 FBXO28Q9NVF7 368 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 MYH4Q9Y623 1939 aa15.78■□□□□ 0.12
VPS28-202ENST00000377348 FMNL1O95466 1100 aaPredicted RBP15.77■□□□□ 0.12
VPS28-202ENST00000377348 NOVP48745 357 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 COG2Q14746 738 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 Q3C1V9 767 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 STOX1Q6ZVD7 989 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 MORF4L1Q9UBU8 362 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 MTMR7Q9Y216 660 aa15.77■□□□□ 0.12
VPS28-202ENST00000377348 CENPFP49454 3210 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 DSG3P32926 999 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 ERVK-9P63128 1117 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 ERVK-24P63145 666 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 PPP4R3BQ5MIZ7 849 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 SLFN13Q68D06 897 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 RCSD1Q6JBY9 416 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 CYB5R4Q7L1T6 521 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 GMCL1P1Q8NEA9 526 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 GPRC5AQ8NFJ5 357 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 ATG4CQ96DT6 458 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 KRT23Q9C075 422 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 BTBD7Q9P203 1132 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 ZSWIM5Q9P217 1185 aa15.76■□□□□ 0.11
VPS28-202ENST00000377348 RLFQ13129 1914 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 E7EWF7 191 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 SLC27A2O14975 620 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 MCCP23508 829 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 FCGRTP55899 365 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 LBX2Q6XYB7 198 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 TMEM47Q9BQJ4 181 aa15.75■□□□□ 0.11
VPS28-202ENST00000377348 PORCNQ9H237 461 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms