RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 GSTA4O15217 222 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 ANLNQ9NQW6 1124 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 PTPN23Q9H3S7 1636 aa12.77□□□□□ -0.37
VPS13A-205ENST00000376636 M0QZ92 97 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 KRT10P13645 584 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 PRPSAP1Q14558 356 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 CCDC197Q8NCU1 140 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 RHPN1Q8TCX5 695 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 MCM9Q9NXL9 1143 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGDIAP52565 204 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 RNF207Q6ZRF8 634 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 ANKRD35Q8N283 1001 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGAP45Q92619 1136 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 GCNT3O95395 438 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 DNM2P50570 870 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF449Q6P9G9 518 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 PIP4K2CQ8TBX8 421 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 CHMP6Q96FZ7 201 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 GPHNQ9NQX3 736 aaPredicted RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 GTPBP10A4D1E9 387 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 CCDC159P0C7I6 412 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 MCF2P10911 925 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 KPNA2P52292 529 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 HADHQ16836 314 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 FGD4Q96M96 766 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 KRT82Q9NSB4 513 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 EIF2AK4Q9P2K8 1649 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 A0A1B0GVL5 298 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 POLR2DO15514 142 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 LPXNO60711 386 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 SRRM1Q8IYB3 904 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 SNX1Q13596 522 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF622Q969S3 477 aaKnown RBP eCLIP12.76□□□□□ -0.372e-6■■□□□ 14.3
VPS13A-205ENST00000376636 EFCAB8A8MWE9 144 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 OCA2Q04671 838 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 NUDT16Q96DE0 195 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 CDV3Q9UKY7 258 aaKnown RBP12.76□□□□□ -0.37
VPS13A-205ENST00000376636 FANCCQ00597 558 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 SLMAPQ14BN4 828 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 SLC13A4Q9UKG4 626 aa12.76□□□□□ -0.37
VPS13A-205ENST00000376636 PDE1AP54750 535 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 RTEL1Q9NZ71 1219 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 WWC3Q9ULE0 1092 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 SNRPA1P09661 255 aaKnown RBP12.75□□□□□ -0.37
VPS13A-205ENST00000376636 XRCC5P13010 732 aaKnown RBP12.75□□□□□ -0.37
VPS13A-205ENST00000376636 GPC4O75487 556 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 FBXL13Q8NEE6 735 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 SUFUQ9UMX1 484 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 TTC1Q99614 292 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 ZBBXA8MT70 800 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 INHBAP08476 426 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 LETM2Q2VYF4 491 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 ZBTB3Q9H5J0 574 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 FRMD3A2A2Y4 597 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 TTC25Q96NG3 672 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 TSHZ3Q63HK5 1081 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 KDM3AQ9Y4C1 1321 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 GUCY2FP51841 1108 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 FLOT2Q14254 428 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 SETDB2Q96T68 719 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 UPF3AQ9H1J1 476 aaKnown RBP12.75□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGEF10LQ9HCE6 1279 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 IFNB1P01574 187 aa12.75□□□□□ -0.37
VPS13A-205ENST00000376636 POLR2BP30876 1174 aaKnown RBP12.75□□□□□ -0.37
VPS13A-205ENST00000376636 TYW5A2RUC4 315 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 N4BP1O75113 896 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF75DP51815 510 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 IQCB1Q15051 598 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ITSN2Q9NZM3 1697 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ATF2P15336 505 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 AK2P54819 239 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ANKRD13DQ6ZTN6 518 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 NME8Q8N427 588 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 PSMB7Q99436 277 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 IFNA8P32881 189 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ATG16L1Q676U5 607 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 IFT122Q9HBG6 1241 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 FGFR1OP2Q9NVK5 253 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 KRT4P19013 534 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 STAT1P42224 750 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 POSTNQ15063 836 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 SUCLA2Q9P2R7 463 aaPredicted RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 NVLO15381 856 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 EEF1GP26641 437 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 LIG3P49916 1009 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 LZTS2Q9BRK4 669 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 PNMA2Q9UL42 364 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 DNM3Q9UQ16 869 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 PI4KAP2A4QPH2 592 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 GRM8O00222 908 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 SP4Q02446 784 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 C20orf194Q5TEA3 1177 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 PI4KAP1Q8N8J0 262 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 THUMPD2Q9BTF0 503 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 ATP1A2P50993 1020 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 HP1BP3Q5SSJ5 553 aaPredicted RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 RAPH1Q70E73 1250 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 MAGEB6Q8N7X4 407 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 TSC22D3Q99576 134 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 TMEM247A6NEH6 219 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms