RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MTA3Q9BTC8 594 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 ACBD3Q9H3P7 528 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 LIMA1Q9UHB6 759 aaKnown RBP23.92■■□□□ 1.42
UPF3A-202ENST00000375299 FAM205CA6NFA0 338 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 CCT6AP40227 531 aaKnown RBP23.92■■□□□ 1.42
UPF3A-202ENST00000375299 CTSWP56202 376 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 AMPD2Q01433 879 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 DNAJC10Q8IXB1 793 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 ZNF654Q8IZM8 581 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 TMTC2Q8N394 836 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 NUP133Q8WUM0 1156 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 CCDC102AQ96A19 550 aa23.92■■□□□ 1.42
UPF3A-202ENST00000375299 KRT31Q15323 416 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 MYO6Q9UM54 1294 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 HSPA2P54652 639 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 MAP3K12Q12852 859 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 MAPK8IP2Q13387 824 aaPredicted RBP23.91■■□□□ 1.42
UPF3A-202ENST00000375299 TRIM14Q14142 442 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 WDR93Q6P2C0 686 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 NOA1Q8NC60 698 aaKnown RBP23.91■■□□□ 1.42
UPF3A-202ENST00000375299 FERMT2Q96AC1 680 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 RNF26Q9BY78 433 aaPredicted RBP23.91■■□□□ 1.42
UPF3A-202ENST00000375299 ASAP1Q9ULH1 1129 aa23.91■■□□□ 1.42
UPF3A-202ENST00000375299 N4BP3O15049 544 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 EVA1CP58658 441 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 ZBTB9Q96C00 473 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 SHISA4Q96DD7 197 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 MED4Q9NPJ6 270 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 RSPH14Q9UHP6 348 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 ABCA3Q99758 1704 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 MYH2Q9UKX2 1941 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 BCORQ6W2J9 1755 aa23.9■■□□□ 1.42
UPF3A-202ENST00000375299 TDO2P48775 406 aa23.89■■□□□ 1.42
UPF3A-202ENST00000375299 SPATA5Q8NB90 893 aa23.89■■□□□ 1.42
UPF3A-202ENST00000375299 LRRIQ3A6PVS8 624 aaPredicted RBP23.89■■□□□ 1.41
UPF3A-202ENST00000375299 KRT2P35908 639 aa23.89■■□□□ 1.41
UPF3A-202ENST00000375299 NUP88Q99567 741 aaPredicted RBP23.89■■□□□ 1.41
UPF3A-202ENST00000375299 MYH13Q9UKX3 1938 aa23.89■■□□□ 1.41
UPF3A-202ENST00000375299 LRRC10BA6NIK2 292 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 PRKAB2O43741 272 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 BMP15O95972 392 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 XBP1P17861 261 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 COPB1P53618 953 aaKnown RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 SPAG1Q07617 926 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 EARS2Q5JPH6 523 aaKnown RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 PIGBQ92521 554 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 SLF1Q9BQI6 1058 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 NACAP1Q9BZK3 213 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 RNF225M0QZC1 329 aaPredicted RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 CDC25AP30304 524 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 TNNT3P45378 269 aaPredicted RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 PUM3Q15397 648 aaKnown RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 NCAPH2Q6IBW4 605 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 GIGYF2Q6Y7W6 1299 aaKnown RBP23.88■■□□□ 1.41
UPF3A-202ENST00000375299 NLRP10Q86W26 655 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 LPIN2Q92539 896 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 VPS54Q9P1Q0 977 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 SLAIN2Q9P270 581 aa23.88■■□□□ 1.41
UPF3A-202ENST00000375299 GPTP24298 496 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 AKAP17AQ02040 695 aaKnown RBP23.87■■□□□ 1.41
UPF3A-202ENST00000375299 PHF20Q9BVI0 1012 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 VPS16Q9H269 839 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 GNAT2P19087 354 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 CCDC148Q8NFR7 591 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 IPO4Q8TEX9 1081 aaKnown RBP23.87■■□□□ 1.41
UPF3A-202ENST00000375299 MKRN1Q9UHC7 482 aaKnown RBP23.87■■□□□ 1.41
UPF3A-202ENST00000375299 RWDD2AQ9UIY3 292 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 SLC4A4Q9Y6R1 1079 aa23.87■■□□□ 1.41
UPF3A-202ENST00000375299 COBLO75128 1261 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 STARD3NLO95772 234 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 FGFR2P21802 821 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 LCORLQ8N3X6 602 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 RNF41Q9H4P4 317 aaPredicted RBP23.86■■□□□ 1.41
UPF3A-202ENST00000375299 VIPAS39Q9H9C1 493 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 TAB2Q9NYJ8 693 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 ANKRD36CQ5JPF3 1778 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 XDHP47989 1333 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 KRT9P35527 623 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 HLFQ16534 295 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 RRAGBQ5VZM2 374 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 FOXR1Q6PIV2 292 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 ANKRD20A12PQ8NF67 263 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 UBAC1Q9BSL1 405 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 PNPLA7Q6ZV29 1317 aa23.86■■□□□ 1.41
UPF3A-202ENST00000375299 RTL9Q8NET4 1388 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 LRP5O75197 1615 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 IRS4O14654 1257 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-202ENST00000375299 PHACTR2O75167 634 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 PKN1Q16512 942 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 TRAPPC11Q7Z392 1133 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 STAMQ92783 540 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 EFCC1Q9HA90 598 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 WNT7AO00755 349 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 RASGRF1Q13972 1273 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 PPP2R5BQ15173 497 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 NOM1Q5C9Z4 860 aaKnown RBP23.85■■□□□ 1.41
UPF3A-202ENST00000375299 ZFP91Q96JP5 570 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-202ENST00000375299 FAM204AQ9H8W3 233 aa23.85■■□□□ 1.41
UPF3A-202ENST00000375299 PAK1Q13153 545 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 TCP11X2Q5H9J9 407 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms