RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 CUL9Q8IWT3 2517 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 SEPT4O43236 478 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 FLOT1O75955 427 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 CYBAP13498 195 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 ERCC3P19447 782 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 ANO1Q5XXA6 986 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 EAF2Q96CJ1 260 aaPredicted RBP17.1■□□□□ 0.33
PTCH1-202ENST00000375271 MOV10L1Q9BXT6 1211 aaKnown RBP17.1■□□□□ 0.33
PTCH1-202ENST00000375271 SPATC1LQ9H0A9 340 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 NOP58Q9Y2X3 529 aaKnown RBP17.1■□□□□ 0.33
PTCH1-202ENST00000375271 DNAH12Q6ZR08 3092 aa17.1■□□□□ 0.33
PTCH1-202ENST00000375271 POTEB2H3BUK9 544 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 SHMT1P34896 483 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 PLCD1P51178 756 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 HSP90AB4PQ58FF6 505 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 TMEM179Q6ZVK1 233 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 SHCBP1Q8NEM2 672 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 DDRGK1Q96HY6 314 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 BCL11AQ9H165 835 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 MROH8Q9H579 483 aa17.09■□□□□ 0.33
PTCH1-202ENST00000375271 CCER2I3L3R5 266 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 FCER1AP12319 257 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 TRIM60Q495X7 471 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 SLC9C2Q5TAH2 1124 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 POTEEQ6S8J3 1075 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 SLC39A5Q6ZMH5 540 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 GUCD1Q96NT3 240 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 COL25A1Q9BXS0 654 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-202ENST00000375271 ANTXR1Q9H6X2 564 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 SWAP70Q9UH65 585 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 UNC80Q8N2C7 3258 aa17.08■□□□□ 0.32
PTCH1-202ENST00000375271 ZNF236Q9UL36 1845 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 RAD21O60216 631 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 RARBP10826 455 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 ICA1Q05084 483 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 TRPV1Q8NER1 839 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 FERMT2Q96AC1 680 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 DNAJC2Q99543 621 aaKnown RBP17.07■□□□□ 0.32
PTCH1-202ENST00000375271 EXOC6BQ9Y2D4 811 aa17.07■□□□□ 0.32
PTCH1-202ENST00000375271 MYH8P13535 1937 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 ADCYAP1R1P41586 468 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 SHHQ15465 462 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 RNF180Q86T96 592 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 ABRAQ8N0Z2 381 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 CLASRPQ8N2M8 674 aaKnown RBP17.06■□□□□ 0.32
PTCH1-202ENST00000375271 MAFAQ8NHW3 353 aaPredicted RBP17.06■□□□□ 0.32
PTCH1-202ENST00000375271 BADQ92934 168 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 RIOK1Q9BRS2 568 aaKnown RBP17.06■□□□□ 0.32
PTCH1-202ENST00000375271 XPNPEP3Q9NQH7 507 aa17.06■□□□□ 0.32
PTCH1-202ENST00000375271 LTBP2Q14767 1821 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 SLC25A27O95847 323 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 IFIT2P09913 472 aaKnown RBP17.05■□□□□ 0.32
PTCH1-202ENST00000375271 FOSL2P15408 326 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 PDE6AP16499 860 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 DSG3P32926 999 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 KCTD2Q14681 263 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 SPICE1Q8N0Z3 855 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 MMP19Q99542 508 aa17.05■□□□□ 0.32
PTCH1-202ENST00000375271 ZNF532Q9HCE3 1301 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 GOLIM4O00461 696 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 GUCY1A2P33402 732 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 LRRC41Q15345 812 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 SDR42E1Q8WUS8 393 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 MAML3Q96JK9 1138 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 RNPC3Q96LT9 517 aaKnown RBP17.04■□□□□ 0.32
PTCH1-202ENST00000375271 CDX2Q99626 313 aaPredicted RBP17.04■□□□□ 0.32
PTCH1-202ENST00000375271 IL1RAPL2Q9NP60 686 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 TACC3Q9Y6A5 838 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 LAMA2P24043 3122 aaKnown RBP17.04■□□□□ 0.32
PTCH1-202ENST00000375271 RLFQ13129 1914 aa17.04■□□□□ 0.32
PTCH1-202ENST00000375271 A0A1W2PRG0 241 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 APBB1O00213 710 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 WDR46O15213 610 aaKnown RBP17.03■□□□□ 0.32
PTCH1-202ENST00000375271 RAG1P15918 1043 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 COPB2P35606 906 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 SMAD3P84022 425 aaKnown RBP17.03■□□□□ 0.32
PTCH1-202ENST00000375271 GABPAQ06546 454 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 FAM47AQ5JRC9 791 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 PRAMEF19Q5SWL8 479 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 C9orf50Q5SZB4 431 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 CEP85Q6P2H3 762 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 ATG4CQ96DT6 458 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 CCDC17Q96LX7 622 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.03■□□□□ 0.32
PTCH1-202ENST00000375271 SEMA6BQ9H3T3 888 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 PDLIM7Q9NR12 457 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 CNPY2Q9Y2B0 182 aa17.03■□□□□ 0.32
PTCH1-202ENST00000375271 CTDP1Q9Y5B0 961 aaPredicted RBP17.03■□□□□ 0.32
PTCH1-202ENST00000375271 COBLO75128 1261 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 CLTBP09497 229 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 SLC44A5Q8NCS7 719 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 MYLIPQ8WY64 445 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 VCPKMTQ9H867 229 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 GOPCQ9HD26 462 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 DCP1AQ9NPI6 582 aaPredicted RBP17.02■□□□□ 0.32
PTCH1-202ENST00000375271 NRBP1Q9UHY1 535 aa17.02■□□□□ 0.32
PTCH1-202ENST00000375271 A0A0G2JMZ2 1700 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 PQBP1O60828 265 aaKnown RBP17.01■□□□□ 0.31
PTCH1-202ENST00000375271 HMMRO75330 724 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 TLE2Q04725 743 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms