RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CRACR2BQ8N4Y2 399 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 NEDD1Q8NHV4 660 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 TRIM34Q9BYJ4 488 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 RNF181Q9P0P0 153 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 TAOK2Q9UL54 1235 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 GREB1LQ9C091 1923 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 MYH4Q9Y623 1939 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 GOLGA6L4A6NEF3 574 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 TROAPQ12815 778 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 CLEC10AQ8IUN9 316 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 PIBF1Q8WXW3 757 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 PI4KBQ9UBF8 816 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 MYH15Q9Y2K3 1946 aa15.21■□□□□ 0.03
SQSTM1-201ENST00000360718 COL2A1P02458 1487 aaPredicted RBP15.21■□□□□ 0.02
SQSTM1-201ENST00000360718 GOLGA6L6A8MZA4 724 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 UBE2Q2LH0YL09 131 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 DDAH1O94760 285 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 DNTTIP2Q5QJE6 756 aaKnown RBP15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 MTERF4Q7Z6M4 381 aaKnown RBP15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 CMTR1Q8N1G2 835 aaKnown RBP15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 FANCBQ8NB91 859 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 TMEM39BQ9GZU3 492 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 KAT14Q9H8E8 782 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 ORC3Q9UBD5 711 aaPredicted RBP15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 GPC2Q8N158 579 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 PHKBQ93100 1093 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 CEP95Q96GE4 821 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 PGAP2Q9UHJ9 254 aa15.2■□□□□ 0.02
SQSTM1-201ENST00000360718 DDNO94850 711 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 RRP1BQ14684 758 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 MAP3K11Q16584 847 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 C9orf131Q5VYM1 1079 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 RASGRP2Q7LDG7 609 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 METTL16Q86W50 562 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 FAM151AQ8WW52 585 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 ANKS1AQ92625 1134 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 CSRNP1Q96S65 589 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 NUP62CLQ9H1M0 184 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 RBM28Q9NW13 759 aaKnown RBP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 PLIN4Q96Q06 1357 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 FOSBP53539 338 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 NOLC1Q14978 699 aaKnown RBP eCLIP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 CDC37L1Q7L3B6 337 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 FOXP4Q8IVH2 680 aaPredicted RBP15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 TRIM22Q8IYM9 498 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 TRPM4Q8TD43 1214 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 SPATA32Q96LK8 384 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 GPRC5DQ9NZD1 345 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 STX8Q9UNK0 236 aa15.19■□□□□ 0.02
SQSTM1-201ENST00000360718 IGKV6D-41A0A0C4DH26 115 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 EPS15P42566 896 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 JAG1P78504 1218 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 PLCB2Q00722 1185 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 SSRP1Q08945 709 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 KIF4BQ2VIQ3 1234 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 FKBP1CQ5VVH2 108 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 CTCFLQ8NI51 663 aaPredicted RBP15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 TMEM47Q9BQJ4 181 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 GJB4Q9NTQ9 266 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 BAZ2BQ9UIF8 2168 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 IFNAR1P17181 557 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 NOVP48745 357 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 TATDN1Q6P1N9 297 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 CCDC82Q8N4S0 544 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 PRIMPOLQ96LW4 560 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 CCDC17Q96LX7 622 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 AIFM3Q96NN9 605 aa15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 DDX19AQ9NUU7 478 aaKnown RBP15.18■□□□□ 0.02
SQSTM1-201ENST00000360718 PLEKHA8P1O95397 391 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 NBPF11Q86T75 865 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 FERMT3Q86UX7 667 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 FAM83AQ86UY5 434 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 PNMA1Q8ND90 353 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 FAM200AQ8TCP9 573 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 WASF1Q92558 559 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 C8orf76Q96K31 380 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 KIF5BP33176 963 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 HIRAP54198 1017 aaPredicted RBP15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 GPR162Q16538 588 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 PPP4R3BQ5MIZ7 849 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 SLC26A6Q9BXS9 759 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 ZSCAN16Q9H4T2 348 aaPredicted RBP15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 MTMR4Q9NYA4 1195 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 HACL1Q9UJ83 578 aa15.17■□□□□ 0.02
SQSTM1-201ENST00000360718 STK36Q9NRP7 1315 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 GDF11O95390 407 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 GUCY1A2P33402 732 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 AKAP17AQ02040 695 aaKnown RBP15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 FUT2Q10981 343 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 RASA3Q14644 834 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 OTUD7BQ6GQQ9 843 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 TEPSINQ96N21 525 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 TNMDQ9H2S6 317 aa15.16■□□□□ 0.02
SQSTM1-201ENST00000360718 MPHOSPH10O00566 681 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 FMNL1O95466 1100 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 TNNI2P48788 182 aa15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 TRIM29Q14134 588 aa15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 CERKLQ49MI3 558 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 MAP3K14Q99558 947 aa15.15■□□□□ 0.02
SQSTM1-201ENST00000360718 TTC12Q9H892 705 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms