RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 LRRC41Q15345 812 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 ALDH1L2Q3SY69 923 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 GLIPR1L2Q4G1C9 344 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 ADGRA1Q86SQ6 560 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 METTL16Q86W50 562 aaKnown RBP13.69□□□□□ -0.22
RTN3-204ENST00000354497 NOB1Q9ULX3 412 aaKnown RBP13.69□□□□□ -0.22
RTN3-204ENST00000354497 SPDYE16A6NNV3 312 aaPredicted RBP13.68□□□□□ -0.22
RTN3-204ENST00000354497 E9PSI1 815 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 PQBP1O60828 265 aaKnown RBP13.68□□□□□ -0.22
RTN3-204ENST00000354497 NEFLP07196 543 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 CLTBP09497 229 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 DNAJB2P25686 324 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 ITGB8P26012 769 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 FPGSQ05932 587 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 SNX17Q15036 470 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 FAM47AQ5JRC9 791 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 OLFML2BQ68BL8 750 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 ACER1Q8TDN7 264 aa13.68□□□□□ -0.22
RTN3-204ENST00000354497 RLFQ13129 1914 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 USP5P45974 858 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 PPP4CP60510 307 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 G3BP1Q13283 466 aaKnown RBP eCLIP13.67□□□□□ -0.22
RTN3-204ENST00000354497 PLS1Q14651 629 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 ABCB5Q2M3G0 1257 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 IL27Q8NEV9 243 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 FAM122AQ96E09 287 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 GAS2L1Q99501 681 aaPredicted RBP13.67□□□□□ -0.22
RTN3-204ENST00000354497 MOV10L1Q9BXT6 1211 aaKnown RBP13.67□□□□□ -0.22
RTN3-204ENST00000354497 API5Q9BZZ5 524 aaKnown RBP13.67□□□□□ -0.22
RTN3-204ENST00000354497 TANGO6Q9C0B7 1094 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 CABP5Q9NP86 173 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 SLC5A4Q9NY91 659 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 TACC3Q9Y6A5 838 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 DNAH12Q6ZR08 3092 aa13.67□□□□□ -0.22
RTN3-204ENST00000354497 ZNF521Q96K83 1311 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.66□□□□□ -0.22
RTN3-204ENST00000354497 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.66□□□□□ -0.22
RTN3-204ENST00000354497 ERCC3P19447 782 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 CERKLQ49MI3 558 aaPredicted RBP13.66□□□□□ -0.22
RTN3-204ENST00000354497 CCDC129Q6ZRS4 1044 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 NCAPG2Q86XI2 1143 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 TIFAQ96CG3 184 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 KIAA1683Q9H0B3 1180 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 ZNF576Q9H609 170 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 XPNPEP3Q9NQH7 507 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 TMEM39AQ9NV64 488 aa13.66□□□□□ -0.22
RTN3-204ENST00000354497 HAX1O00165 279 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 COBLO75128 1261 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 CYP7A1P22680 504 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 PLA2G5P39877 138 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 CCDC158Q5M9N0 1113 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 LBX2Q6XYB7 198 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 MIGA1Q8NAN2 632 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 ADAMTS19Q8TE59 1207 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 SPATC1LQ9H0A9 340 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 THEGQ9P2T0 379 aa13.65□□□□□ -0.22
RTN3-204ENST00000354497 MPHOSPH10O00566 681 aaKnown RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 STRNO43815 780 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 GNAI3P08754 354 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 RARBP10826 455 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 CCDC85BQ15834 202 aaPredicted RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 C1orf53Q5VUE5 145 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 TATDN1Q6P1N9 297 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 RNF180Q86T96 592 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 SERPINB13Q9UIV8 391 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 PHF24Q9UPV7 400 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 PRUNE2Q8WUY3 3088 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 KIAA0355O15063 1070 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 PGK1P00558 417 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 CYP2E1P05181 493 aaPredicted RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 OS9Q13438 667 aaPredicted RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 COG2Q14746 738 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 ATXN2LQ8WWM7 1075 aaKnown RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 UHRF1Q96T88 793 aaPredicted RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 PRDM12Q9H4Q4 367 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 PIH1D3Q9NQM4 214 aaKnown RBP13.64□□□□□ -0.23
RTN3-204ENST00000354497 CDH23Q9H251 3354 aa13.64□□□□□ -0.23
RTN3-204ENST00000354497 CDK5RAP2Q96SN8 1893 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 FOCADQ5VW36 1801 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 A0A1W2PQ45 241 aaPredicted RBP13.63□□□□□ -0.23
RTN3-204ENST00000354497 A0A1W2PQY0 241 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 IDH1O75874 414 aaKnown RBP13.63□□□□□ -0.23
RTN3-204ENST00000354497 IGHA2P01877 340 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 IGFBP4P22692 258 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 ZAP70P43403 619 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 SEPT2Q15019 361 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 TTC6Q86TZ1 520 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 MAML3Q96JK9 1138 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 ASB2Q96Q27 587 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 DBNDD2Q9BQY9 259 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 HOXC10Q9NYD6 342 aa13.63□□□□□ -0.23
RTN3-204ENST00000354497 ZNF236Q9UL36 1845 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 GRXCR1A8MXD5 290 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 DCDC2CA8MYV0 355 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 PBX2P40425 430 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 MRPS5P82675 430 aaKnown RBP13.62□□□□□ -0.23
RTN3-204ENST00000354497 SLFN5Q08AF3 891 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 MTX1Q13505 466 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 SLC44A5Q8NCS7 719 aa13.62□□□□□ -0.23
RTN3-204ENST00000354497 SHCBP1Q8NEM2 672 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms