RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TTMPQ5BVD1 217 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 KANK3Q6NY19 840 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 OXER1Q8TDS5 423 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 IGDCC4Q8TDY8 1250 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 HDAC7Q8WUI4 952 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 JAKMIP2Q96AA8 810 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 ARL8AQ96BM9 186 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 PAGE5Q96GU1 130 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 EPSTI1Q96J88 318 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 LY9Q9HBG7 655 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 STRN4Q9NRL3 753 aa7.65□□□□□ -1.18
VPS39-202ENST00000348544 STK36Q9NRP7 1315 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 SHTN1A0MZ66 631 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 FAM205CA6NFA0 338 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 LRRC10BA6NIK2 292 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 FMNL1O95466 1100 aaPredicted RBP7.65□□□□□ -1.19
VPS39-202ENST00000348544 GPTP24298 496 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 ZAP70P43403 619 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 COPB1P53618 953 aaKnown RBP7.65□□□□□ -1.19
VPS39-202ENST00000348544 WDR59Q6PJI9 974 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 BANK1Q8NDB2 785 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.65□□□□□ -1.19
VPS39-202ENST00000348544 JPH2Q9BR39 696 aaPredicted RBP7.65□□□□□ -1.19
VPS39-202ENST00000348544 HAUS4Q9H6D7 363 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 FAM184BQ9ULE4 1060 aa7.65□□□□□ -1.19
VPS39-202ENST00000348544 PARP4Q9UKK3 1724 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 PHRF1Q9P1Y6 1649 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 TTC26A0AVF1 554 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 H7C1W4 665 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 FSBPO95073 299 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 ZFYP08048 801 aaPredicted RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 PDCLQ13371 301 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 RILPL1Q5EBL4 403 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 CCDC122Q5T0U0 273 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 GBP6Q6ZN66 633 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 SND1Q7KZF4 910 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS39-202ENST00000348544 TSEN2Q8NCE0 465 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 STAMQ92783 540 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 CABS1Q96KC9 395 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 LACRTQ9GZZ8 138 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 POLD4Q9HCU8 107 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 GNL3LQ9NVN8 582 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 DMGDHQ9UI17 866 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 TJP1Q07157 1748 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 ATXN2Q99700 1313 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 USP8P40818 1118 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 MRPS25P82663 173 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 SKOR1P84550 965 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 SSRP1Q08945 709 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 SGMS1Q86VZ5 419 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 ANKRD18AQ8IVF6 992 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 AIDAQ96BJ3 306 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 SHISA4Q96DD7 197 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 RPGRIP1Q96KN7 1286 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 CD248Q9HCU0 757 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 A1CFQ9NQ94 594 aaKnown RBP7.64□□□□□ -1.19
VPS39-202ENST00000348544 TACC3Q9Y6A5 838 aa7.64□□□□□ -1.19
VPS39-202ENST00000348544 PKD1L3Q7Z443 1732 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 WNT7AO00755 349 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 CKAP4Q07065 602 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 PPARAQ07869 468 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 DDR1Q08345 913 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 TCP11X2Q5H9J9 407 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 NFXL1Q6ZNB6 911 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 CMTR1Q8N1G2 835 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 SH2D3CQ8N5H7 860 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 ZKSCAN4Q969J2 545 aaPredicted RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 GSDMAQ96QA5 445 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 FOXP1Q9H334 677 aaPredicted RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 ESF1Q9H501 851 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 SLC52A2Q9HAB3 445 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 AATFQ9NY61 560 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS39-202ENST00000348544 DUSP10Q9Y6W6 482 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 XDHP47989 1333 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 MYH7P12883 1935 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 CAMTA1Q9Y6Y1 1673 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 LMTK3Q96Q04 1460 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 GOLGA8KD6RF30 607 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 NDUFAB1O14561 156 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 CLGNO14967 610 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 MEFVO15553 781 aaPredicted RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 KIF1CO43896 1103 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 APPP05067 770 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 IFNAR1P17181 557 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 TRIM14Q14142 442 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 TTF1Q15361 905 aaPredicted RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 TMEM67Q5HYA8 995 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 EARS2Q5JPH6 523 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 AMOTL1Q8IY63 956 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 CAGE1Q8TC20 777 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 SYMPKQ92797 1274 aaKnown RBP7.63□□□□□ -1.19
VPS39-202ENST00000348544 FAM212AQ96EL1 285 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 TMEM87BQ96K49 555 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 DNAJC7Q99615 494 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 LRRC1Q9BTT6 524 aa7.63□□□□□ -1.19
VPS39-202ENST00000348544 ARHGAP23Q9P227 1491 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 LRP6O75581 1613 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 KCNJ18B7U540 433 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 C21orf2O43822 256 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 EPB41P11171 864 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 198.6 ms