RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SPATS2LQ9NUQ6 558 aaKnown RBP5.32□□□□□ -1.56
CSMD3-203ENST00000343508 BAIAP2L1Q9UHR4 511 aa5.32□□□□□ -1.56
CSMD3-203ENST00000343508 FAM184BQ9ULE4 1060 aa5.32□□□□□ -1.56
CSMD3-203ENST00000343508 SRPRBQ9Y5M8 271 aaKnown RBP5.32□□□□□ -1.56
CSMD3-203ENST00000343508 STK24Q9Y6E0 443 aa5.32□□□□□ -1.56
CSMD3-203ENST00000343508 NEO1Q92859 1461 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TBCAO75347 108 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FLOT1O75955 427 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MMP1P03956 469 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PCK1P35558 622 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 LONP1P36776 959 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MUM1L1Q5H9M0 696 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 KLHDC4Q8TBB5 520 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SMC6Q96SB8 1091 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 JPH2Q9BR39 696 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SLC52A2Q9HAB3 445 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 NKIRAS1Q9NYS0 192 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MROH2AA6NES4 1674 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ATP2A2P16615 1042 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 RPS6KA1Q15418 735 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ASIC2Q16515 512 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PIK3AP1Q6ZUJ8 805 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SREK1Q8WXA9 508 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FEZ2Q9UHY8 353 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ALKQ9UM73 1620 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 NDUFA10O95299 355 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TYW1BQ6NUM6 668 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ZCRB1Q8TBF4 217 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MAGEF1Q9HAY2 307 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ABCB6Q9NP58 842 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MAPK8IP1Q9UQF2 711 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 HOXA7P31268 230 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SLC39A6Q13433 755 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 RESP18Q5W5W9 173 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SRLQ86TD4 932 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF710Q8N1W2 664 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PGBD1Q96JS3 809 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PRM3Q9NNZ6 103 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PLEKHG1Q9ULL1 1385 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 LAD1O00515 517 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 GSTA5Q7RTV2 222 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 KRT28Q7Z3Y7 464 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PCDHA5Q9Y5H7 936 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 NEXMIFQ5QGS0 1516 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TLDC2A0PJX2 215 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FMNL1O95466 1100 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 POLA2Q14181 598 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TSGA10IPQ3SY00 556 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 LONRF3Q496Y0 759 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF658Q5TYW1 1059 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 EMBQ6PCB8 327 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 USP42Q9H9J4 1324 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 CALUO43852 315 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 GCP02774 474 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PUM3Q15397 648 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 NBPF9Q3BBW0 867 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC174Q6PII3 467 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 KCNK9Q9NPC2 374 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FRMD4BQ9Y2L6 1034 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 PCP11498 1178 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MAGEA1P43355 309 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ATP1A2P50993 1020 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TOB2Q14106 344 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FMR1NBQ8N0W7 255 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 NAP1L4Q99733 375 aaKnown RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TAB2Q9NYJ8 693 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 DLG5Q8TDM6 1919 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 HMGB1P1B2RPK0 211 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 GCKP35557 465 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 TRAF1Q13077 416 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ZMYM1Q5SVZ6 1142 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MCTP2Q6DN12 878 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 YY1AP1Q9H869 796 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 MAN1B1Q9UKM7 699 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 USP6P35125 1406 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 LMTK2Q8IWU2 1503 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 SLFN14P0C7P3 912 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 GPTP24298 496 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 DAAM2Q86T65 1068 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF622Q969S3 477 aaKnown RBP eCLIP5.31□□□□□ -1.56
CSMD3-203ENST00000343508 ABHD10Q9NUJ1 306 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 FBXO3Q9UK99 471 aa5.31□□□□□ -1.56
CSMD3-203ENST00000343508 EIF3BP55884 814 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 C10orf76Q5T2E6 689 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 LPIN2Q92539 896 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 PSMB7Q99436 277 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 CSRNP2Q9H175 543 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 HOMER2Q9NSB8 354 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ATP6V0A2Q9Y487 856 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 MROH5Q6ZUA9 1318 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 KLHL30Q0D2K2 578 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SEMA3FQ13275 785 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SH2D4BQ5SQS7 431 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 N4BP2L2Q92802 583 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 CEP63Q96MT8 703 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GDAP1L1Q96MZ0 367 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 COPRSQ9NQ92 184 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 INO80Q9ULG1 1556 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 A2ML1A8K2U0 1454 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms