RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 SPECC1Q5M775 1068 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 KSR2Q6VAB6 950 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 EDC3Q96F86 508 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 SCLT1Q96NL6 688 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 HDAC6Q9UBN7 1215 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 WDR19Q8NEZ3 1342 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 GOLGA8BA8MQT2 603 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 ECM2O94769 699 aaPredicted RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 SNUPNO95149 360 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 MDH1P40925 334 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 EIF4A1P60842 406 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 LACTB2Q53H82 288 aaPredicted RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 TTLL7Q6ZT98 887 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 ZNF579Q8NAF0 562 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 CAPZA3Q96KX2 299 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 RNPC3Q96LT9 517 aaKnown RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 DBF4Q9UBU7 674 aaPredicted RBP20.73■□□□□ 0.91
SMPD1-201ENST00000342245 PLEKHG1Q9ULL1 1385 aa20.73■□□□□ 0.91
SMPD1-201ENST00000342245 MYH8P13535 1937 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 ENC1O14682 589 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 GLE1Q53GS7 698 aaKnown RBP20.72■□□□□ 0.91
SMPD1-201ENST00000342245 CCDC122Q5T0U0 273 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 CRELD2Q6UXH1 353 aaPredicted RBP20.72■□□□□ 0.91
SMPD1-201ENST00000342245 MAP3K2Q9Y2U5 619 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 HMGB1P1B2RPK0 211 aaPredicted RBP20.72■□□□□ 0.91
SMPD1-201ENST00000342245 FOXN1O15353 648 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 MGRN1O60291 552 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 NR1D1P20393 614 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 LINS1Q8NG48 757 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 CCHCR1Q8TD31 782 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 CCDC47Q96A33 483 aaKnown RBP20.72■□□□□ 0.91
SMPD1-201ENST00000342245 SUCLG2Q96I99 432 aa20.72■□□□□ 0.91
SMPD1-201ENST00000342245 LIMA1Q9UHB6 759 aaKnown RBP20.72■□□□□ 0.91
SMPD1-201ENST00000342245 KLF18A0A0U1RQI7 1052 aa20.71■□□□□ 0.91
SMPD1-201ENST00000342245 LRRC10BA6NIK2 292 aa20.71■□□□□ 0.91
SMPD1-201ENST00000342245 MICAL1Q8TDZ2 1067 aa20.71■□□□□ 0.91
SMPD1-201ENST00000342245 TSR1Q2NL82 804 aaKnown RBP20.71■□□□□ 0.91
SMPD1-201ENST00000342245 CPSF2Q9P2I0 782 aaKnown RBP20.71■□□□□ 0.91
SMPD1-201ENST00000342245 TOPAZ1Q8N9V7 1692 aa20.7■□□□□ 0.91
SMPD1-201ENST00000342245 TTC36A6NLP5 189 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 DNAJC8O75937 253 aaPredicted RBP20.7■□□□□ 0.9
SMPD1-201ENST00000342245 GHRP10912 638 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 PRLRP16471 622 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 KRT9P35527 623 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 PRPHP41219 470 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 ATP1A2P50993 1020 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 RRP36Q96EU6 259 aaKnown RBP20.7■□□□□ 0.9
SMPD1-201ENST00000342245 ALG1Q9BT22 464 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 HPS5Q9UPZ3 1129 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 KDM3BQ7LBC6 1761 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 SRGAP2O75044 1071 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 IPO7O95373 1038 aaKnown RBP20.7■□□□□ 0.9
SMPD1-201ENST00000342245 CUL4BQ13620 913 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 TNNI3KQ59H18 835 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 ANKRD20A8PQ5CZ79 823 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 CFAP58Q5T655 872 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 KIF9Q9HAQ2 790 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 SERTAD1Q9UHV2 236 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 DBNLQ9UJU6 430 aaKnown RBP20.7■□□□□ 0.9
SMPD1-201ENST00000342245 AMOTL2Q9Y2J4 779 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 REXO2Q9Y3B8 237 aaKnown RBP20.7■□□□□ 0.9
SMPD1-201ENST00000342245 FPGT-TNNI3KV9GXZ4 949 aa20.7■□□□□ 0.9
SMPD1-201ENST00000342245 C4AP0C0L4 1744 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 C4BP0C0L5 1744 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 HSPD1P10809 573 aaKnown RBP20.69■□□□□ 0.9
SMPD1-201ENST00000342245 HDLBPQ00341 1268 aaKnown RBP20.69■□□□□ 0.9
SMPD1-201ENST00000342245 TRIM29Q14134 588 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 RASSF8Q8NHQ8 419 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 SPDL1Q96EA4 605 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 ZIM3Q96PE6 472 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 POLR2DO15514 142 aaKnown RBP20.69■□□□□ 0.9
SMPD1-201ENST00000342245 PECAM1P16284 738 aaPredicted RBP20.69■□□□□ 0.9
SMPD1-201ENST00000342245 VAV2P52735 878 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 KRT40Q6A162 431 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 CYFIP2Q96F07 1278 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 NUCKS1Q9H1E3 243 aaKnown RBP20.69■□□□□ 0.9
SMPD1-201ENST00000342245 EBF2Q9HAK2 575 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 STIM2Q9P246 746 aa20.69■□□□□ 0.9
SMPD1-201ENST00000342245 FRMD3A2A2Y4 597 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 LIN7AO14910 233 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-201ENST00000342245 N4BP3O15049 544 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 GUCY1A3Q02108 690 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 C2orf54Q08AI8 447 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 PDCD2Q16342 344 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-201ENST00000342245 ZNF827Q17R98 1081 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 ZMYM1Q5SVZ6 1142 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 MREGQ8N565 214 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 OR8K1Q8NGG5 319 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 LMBR1Q8WVP7 490 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 AIDAQ96BJ3 306 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 KAZALD1Q96I82 304 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 TSGA10Q9BZW7 698 aa20.68■□□□□ 0.9
SMPD1-201ENST00000342245 EME2A4GXA9 379 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-201ENST00000342245 DDX60Q8IY21 1712 aaKnown RBP20.68■□□□□ 0.9
SMPD1-201ENST00000342245 E7EVH7 732 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 PTPREP23469 700 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 E2F5Q15329 346 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 CHST3Q7LGC8 479 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 IQCKQ8N0W5 287 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 TSEN2Q8NCE0 465 aaKnown RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms