RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ICA1Q05084 483 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 ASPRV1Q53RT3 343 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 SIAH1Q8IUQ4 282 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 SRBD1Q8N5C6 995 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 GMCL1P1Q8NEA9 526 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 ZC3H15Q8WU90 426 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 C8orf76Q96K31 380 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 ALG1Q9BT22 464 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 SLC26A6Q9BXS9 759 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 ZSCAN16Q9H4T2 348 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 CABP5Q9NP86 173 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 GGA3Q9NZ52 723 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 ZBTB21Q9ULJ3 1066 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 DDX11L8A8MPP1 907 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 H3BQV1 296 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 MPHOSPH10O00566 681 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 DTNBO60941 627 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 GH2P01242 217 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 CAP2P40123 477 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 JAG1P78504 1218 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 RESTQ13127 1097 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 SEPT2Q15019 361 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 IFFO2Q5TF58 517 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 DCAF15Q66K64 600 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 USP50Q70EL3 339 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 CLIP2Q9UDT6 1046 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 ZNF112Q9UJU3 913 aa17.31■□□□□ 0.36
CCDC88C-202ENST00000334448 GDF11O95390 407 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 PARP1P09874 1014 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 EEF2P13639 858 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 PTMSP20962 102 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 PKN1Q16512 942 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 GPATCH4Q5T3I0 446 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 DCAF4Q8WV16 495 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 GMCL1Q96IK5 515 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 WDR90Q96KV7 1748 aa17.3■□□□□ 0.36
CCDC88C-202ENST00000334448 ASNSP08243 561 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 ZNF543Q08ER8 600 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 SHROOM1Q2M3G4 852 aaPredicted RBP17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 SLC35G1Q2M3R5 365 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 CLEC10AQ8IUN9 316 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 LRRC47Q8N1G4 583 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 STAG2Q8N3U4 1231 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 TMEM87AQ8NBN3 555 aa17.29■□□□□ 0.36
CCDC88C-202ENST00000334448 SSC5DA1L4H1 1573 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 IQCA1LA6NCM1 817 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 KLRF2D3W0D1 207 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 CTNND1O60716 968 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 AKAP17AQ02040 695 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 PFKFB3Q16875 520 aaPredicted RBP17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 ATL3Q6DD88 541 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 ZNF341Q9BYN7 854 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 RIOX1Q9H6W3 641 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 TMX2Q9Y320 296 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 SCN4AP35499 1836 aa17.28■□□□□ 0.36
CCDC88C-202ENST00000334448 USP17L5A8MUK1 530 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 GOLGA6L22H0YM25 854 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 CYTH3O43739 400 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 EPHX2P34913 555 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 KIF23Q02241 960 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 NBPF12Q5TAG4 269 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 KRT40Q6A162 431 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 BRAPQ7Z569 592 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 CMTR1Q8N1G2 835 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 AIFM3Q96NN9 605 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 SH2D4AQ9H788 454 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 ARHGEF10LQ9HCE6 1279 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 SH3GLB2Q9NR46 395 aa17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 V9GY48 417 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-202ENST00000334448 UTRNP46939 3433 aa17.27■□□□□ 0.35
CCDC88C-202ENST00000334448 PPFIA3O75145 1194 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 SCG2P13521 617 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 XBP1P17861 261 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 TRIM29Q14134 588 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 SUPT20HL1Q3ZLR7 823 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 USP17L2Q6R6M4 530 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 MIGA2Q7L4E1 593 aa17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 TAF1DQ9H5J8 278 aaPredicted RBP17.26■□□□□ 0.35
CCDC88C-202ENST00000334448 A0A1W2PRG0 241 aa17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 UBE2Q2LH0YL09 131 aa17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 hCG_1984214I3L0E3 225 aa17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 MMP1P03956 469 aa17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 U2AF2P26368 475 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 NOL9Q5SY16 702 aaKnown RBP17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 FOXD4L5Q5VV16 416 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 ZNF713Q8N859 430 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 FOXD4L4Q8WXT5 416 aaPredicted RBP17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 MTMR8Q96EF0 704 aa17.25■□□□□ 0.35
CCDC88C-202ENST00000334448 POTECB2RU33 542 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 F5H6K3 240 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 NDUFB10O96000 172 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 KLRC3Q07444 240 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 SLFN13Q68D06 897 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 BTNL9Q6UXG8 535 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 RASGRP2Q7LDG7 609 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 FERMT3Q86UX7 667 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 PNMA8AQ86V59 439 aaPredicted RBP17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 SULF1Q8IWU6 871 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 CCDC82Q8N4S0 544 aa17.24■□□□□ 0.35
CCDC88C-202ENST00000334448 DCPSQ96C86 337 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms