RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SPATA20Q8TB22 786 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 JAKMIP2Q96AA8 810 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 SMARCAL1Q9NZC9 954 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 C4AP0C0L4 1744 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 C4BP0C0L5 1744 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 ATP6V1AP38606 617 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 TDO2P48775 406 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 HERVK_113P62684 666 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 MAP9Q49MG5 647 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 TMED8Q6PL24 325 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 AIDAQ96BJ3 306 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 PAGE5Q96GU1 130 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 LACRTQ9GZZ8 138 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 C1orf167Q5SNV9 1468 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 hCG_1642624A0A1W2PR95 340 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 WNT7AO00755 349 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 EIF3HO15372 352 aaKnown RBP eCLIP15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 ZEB2O60315 1214 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 AMOTQ4VCS5 1084 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 PSMB7Q99436 277 aa15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 DMGDHQ9UI17 866 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-201ENST00000331194 H0YHG0 523 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 CDKL5O76039 1030 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 ECM2O94769 699 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 SSRP1Q08945 709 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 PPFIA1Q13136 1202 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 ANKRD18AQ8IVF6 992 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 STRN4Q9NRL3 753 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 MARF1Q9Y4F3 1742 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 TTC26A0AVF1 554 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 TUBBP07437 444 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 TMEM67Q5HYA8 995 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 TRIML1Q8N9V2 468 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 IGDCC4Q8TDY8 1250 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 XAGE2Q96GT9 111 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 VPS54Q9P1Q0 977 aa15.13■□□□□ 0.01
CCDC88C-201ENST00000331194 SHTN1A0MZ66 631 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 MACROD2A1Z1Q3 448 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 MMP1P03956 469 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 EARS2Q5JPH6 523 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 TSEN2Q8NCE0 465 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 SMCR8Q8TEV9 937 aaPredicted RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 JADE2Q9NQC1 790 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 EHD2Q9NZN4 543 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 EYA2O00167 538 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 NDUFAB1O14561 156 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 SCP2P22307 547 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 IL15P40933 162 aaPredicted RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 COPB1P53618 953 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 UBXN1Q04323 297 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 KCNH5Q8NCM2 988 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 LRRC1Q9BTT6 524 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 SRPRBQ9Y5M8 271 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 FECHP22830 423 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 CYP27A1Q02318 531 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 TTMPQ5BVD1 217 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 NBPF14Q5TI25 921 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 APPBP2Q92624 585 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 CTAGE1Q96RT6 745 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 LY9Q9HBG7 655 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 DONSONQ9NYP3 566 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 MYO1AQ9UBC5 1043 aa15.12■□□□□ 0.01
CCDC88C-201ENST00000331194 LTN1O94822 1766 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 PSMD14O00487 310 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 CTDSPL2Q05D32 466 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 RRAGBQ5VZM2 374 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 BRINP3Q76B58 766 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 SYMPKQ92797 1274 aaKnown RBP15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 FAM107BQ9H098 131 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 TACC3Q9Y6A5 838 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 FNTAP49354 379 aa15.11■□□□□ 0.01
CCDC88C-201ENST00000331194 CXCR5P32302 372 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 SAFBQ15424 915 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 RRP12Q5JTH9 1297 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 WDR59Q6PJI9 974 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 TTLL7Q6ZT98 887 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 CADPS2Q86UW7 1296 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 ELOA2Q8IYF1 753 aaPredicted RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 PRPF38AQ8NAV1 312 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 CCDC51Q96ER9 411 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 ZSWIM5Q9P217 1185 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 KRT14P02533 472 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 APBA1Q02410 837 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 KIAA1328Q86T90 577 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 OTUD6BQ8N6M0 293 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 CENPHQ9H3R5 247 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 CEP126Q9P2H0 1117 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 SLC12A7Q9Y666 1083 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 TRIM49BA6NDI0 452 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 IFIT3O14879 490 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 ACTN3Q08043 901 aaPredicted RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 KCTD19Q17RG1 926 aaPredicted RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 PAPD7Q5XG87 772 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 AENQ8WTP8 325 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 SLAIN2Q9P270 581 aa15.1■□□□□ 0.01
CCDC88C-201ENST00000331194 OVOS2A0A0G2JMS6 1433 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 KCNJ18B7U540 433 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 GUCY1A3Q02108 690 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 KCNJ12Q14500 433 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms